Agrobacterium vitis VAT03-9: RvVAT039_29970
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Entry
RvVAT039_29970 CDS
T08809
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
avv
Agrobacterium vitis VAT03-9
Pathway
avv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
avv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RvVAT039_29970 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
avv03021
]
RvVAT039_29970 (rpoA)
03400 DNA repair and recombination proteins [BR:
avv03400
]
RvVAT039_29970 (rpoA)
Enzymes [BR:
avv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RvVAT039_29970 (rpoA)
Transcription machinery [BR:
avv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RvVAT039_29970 (rpoA)
DNA repair and recombination proteins [BR:
avv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RvVAT039_29970 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
DUF211
HHH_XRCC3_RpoA
IDH
Motif
Other DBs
NCBI-ProteinID:
BCH65781
LinkDB
All DBs
Position
1:3251159..3252169
Genome browser
AA seq
336 aa
AA seq
DB search
MIQKNWQELIKPNKVEFSSSGRTKATLVAEPLERGFGLTLGNALRRVLLSSLRGAAVTAV
QIDGVLHEFSSIPGVREDVTDIVLNIKEIAIKMDGDDAKRMVVRKQGPGVVTAGDIQTVG
DIEILNPHHVICTLDEGAEIRMEFTVNNGKGYVPADRNRAEDAPIGLIPVDSLYSPVKKV
SYKVENTREGQVLDYDKLTMTIETDGSVSGEDAVAFAARILQDQLSVFVNFDEPQREAEE
EAVTELAFNPALLKKVDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKSLN
EIKEVLASMGLHLGMEVPAWPPENIEDLAKRYEDQY
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgattcagaagaattggcaggaactgatcaagccgaacaaggttgagttctcctccagc
ggtcgcaccaaggcaaccctggttgccgaaccgcttgagcggggcttcggtctgacgctc
ggcaacgcgcttcgtcgcgttttgctgtcgtcgctgcgcggtgctgccgtgacggctgtc
cagatcgacggtgttctgcatgaattctcgtcgatcccgggtgttcgcgaagatgtcacc
gacatcgttttgaacatcaaggaaattgccatcaagatggacggcgacgatgccaagcgc
atggttgtccgcaagcagggtccaggcgtcgtgaccgctggagatatccagacggttggc
gatatcgagatcctcaatccgcaccacgtcatctgcacgctggatgaaggcgcggaaatc
cggatggaattcacggtcaacaacggcaagggctatgtcccggctgatcgtaaccgggca
gaagatgctccgattgggcttatcccggtcgatagcctttattcgccggtcaagaaagtg
tcctacaaggtggaaaacacccgcgaaggccaagttcttgactacgacaagctgaccatg
acgatcgagaccgacgggtctgtttcgggtgaagatgcggtggctttcgctgctcgtatt
ctccaggaccagctgtctgtcttcgtcaacttcgatgagccgcagcgtgaagctgaagaa
gaagccgttaccgaactggctttcaacccggcgctgttgaagaaggtcgacgaactcgaa
ctttcggtccgttcggccaactgcctgaagaacgacaatatcgtgtatattggcgatctg
atccagaagaccgaagccgaaatgttgcgcacgccgaactttggtcgcaagtcgctgaac
gagatcaaggaagttctggcttccatgggcctgcatctgggtatggaagttcctgcctgg
ccgccggaaaacattgaagatctcgccaagcgttacgaagaccaatattaa
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