Agrobacterium vitis VAT03-9: RvVAT039_32140
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Entry
RvVAT039_32140 CDS
T08809
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
avv
Agrobacterium vitis VAT03-9
Pathway
avv03030
DNA replication
avv03430
Mismatch repair
avv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
avv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RvVAT039_32140 (holB)
03430 Mismatch repair
RvVAT039_32140 (holB)
03440 Homologous recombination
RvVAT039_32140 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
avv03032
]
RvVAT039_32140 (holB)
03400 DNA repair and recombination proteins [BR:
avv03400
]
RvVAT039_32140 (holB)
Enzymes [BR:
avv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RvVAT039_32140 (holB)
DNA replication proteins [BR:
avv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RvVAT039_32140 (holB)
DNA repair and recombination proteins [BR:
avv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RvVAT039_32140 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
AAA
Pox_E10
nSTAND3
RuvB_N
AAA_5
AAA_16
NACHT
AAA_22
Phage_tail_C
Motif
Other DBs
NCBI-ProteinID:
BCH65998
LinkDB
All DBs
Position
1:3471001..3472023
Genome browser
AA seq
340 aa
AA seq
DB search
MEKPGLLDGAIAPFANDRLFGHGAAEQFLASSYQSGKLHHAILIEGPEGIGKATLAFRFA
HHVLSHPDPASAPFVIADPDPNSLVGRQIASGASHNLLHIARPVDEKTGRVKSSITVEEI
RKAGHFFSQTSGGGNWRIVILDPADDMNRNAANAILKVLEEPPKRSLFLVLSHAPGKLLP
TIRSRCMPLKLQTLGANDLASALAHLGVSPAVEQMAALSDLSKGSVSQALKLINYGGMEI
IAAFNAILASEGPAARKQMHKLADALSAKDSDVIYYFFIEHLSEFLMDNARQVAMAGDLS
RAERLSRLSSAIIEKLGVAGAYNLDRKQTLLEILGEVAAA
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaacccggccttctcgatggtgccattgcgccttttgccaatgacaggctgttt
ggccatggcgcggcggaacagtttctggccagttcctaccagtccggcaagcttcatcat
gcgatcctgatcgaagggccggaggggatcggcaaggcaacgctggccttccgttttgct
catcatgtcctgtcgcatcccgaccccgccagcgcccccttcgtcatcgccgacccggac
cccaattcgctggttgggcggcagattgcgtccggggcctcgcataacctcctgcatatt
gcccgaccggtggatgaaaagaccggcagggtaaaatcctcgattaccgtggaggaaatc
cgcaaggccgggcatttcttttcccagacctcgggcggtggcaattggcgcatcgttatt
ctcgatcccgccgacgacatgaaccgcaatgcggccaatgccattttgaaagtgctggaa
gagccgccgaaacggtcgctgtttctggtcctgtcccatgcgcccggcaagcttttgccc
accattcgctcacgctgcatgccgctgaaactgcaaacgcttggcgcgaacgatctggcc
agcgcgctggcccatctgggcgtctcgccagctgtggagcagatggcggcgctttccgat
ctctccaagggcagcgtgtcgcaggcgctgaaactgatcaattacggcggcatggaaatc
atcgccgccttcaatgcgatccttgccagtgaaggtccggcggcaagaaaacagatgcac
aagctggccgatgcgctttcagccaaggacagcgacgtgatctattatttcttcatcgag
catttgtccgaattcctgatggacaatgcgcgccaggtggcgatggcgggcgatctttca
agggccgagcggctatcgcggctttccagcgccatcattgaaaagcttggcgttgccggg
gcctataaccttgaccggaagcagacgctgctggaaattcttggcgaggtcgcggctgca
taa
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