Agrobacterium vitis VAT03-9: RvVAT039_32470
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Entry
RvVAT039_32470 CDS
T08809
Symbol
dac
Name
(GenBank) penicillin-binding protein
KO
K07258
serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:
3.4.16.4
]
Organism
avv
Agrobacterium vitis VAT03-9
Pathway
avv00550
Peptidoglycan biosynthesis
avv01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
avv00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
RvVAT039_32470 (dac)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
avv01002
]
RvVAT039_32470 (dac)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
avv01011
]
RvVAT039_32470 (dac)
Enzymes [BR:
avv01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
RvVAT039_32470 (dac)
Peptidases and inhibitors [BR:
avv01002
]
Serine peptidases
Family S11: D-Ala-D-Ala carboxypeptidase A family
RvVAT039_32470 (dac)
Peptidoglycan biosynthesis and degradation proteins [BR:
avv01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
RvVAT039_32470 (dac)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S11
SPOR
Beta-lactamase2
Beta-lactamase
Motif
Other DBs
NCBI-ProteinID:
BCH66031
LinkDB
All DBs
Position
1:complement(3505075..3506481)
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AA seq
468 aa
AA seq
DB search
MRVSLTVALVCATLVAPAPEAAAASRYADIVVDVNNGKVLRATDADSLRYPASLTKMMTL
YLVFEALEKGRIRLNSSVPVSAHAASEPPSKLGLRPGGSFTVEQGIQALVTRSANDAATA
FGEYLGGSEARFAQMMTSKARALGMSRTTYRNANGLPNSGQMTTARDQARLGMALRQHFP
QYYAYFSTRSFTYGRQVIGNHNRLIGSVRGVDGIKTGFTNASGFNLVTSLQIDGKSVVGV
VLGGASGAARDNQMRKLMATYLPEASRRGSASPLIARQSTVPEPMAPVARETAVAPQLPQ
SGVPVPGGRYDTGSLSETAYAGGGGANDAVAALAKQAEASQALETESAPMPQTRKSASRH
SKSSGPKPPADVDNTVTFSTKAPTAAPSGWTVQIGVSDSQEAAMDLLKSARAKSGISLKG
ARPFAMAYGEGASQVYRARFVGFDDQKSAVNACNRLKKAGVSCWAAMQ
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgtctctctcaccgtggctctggtctgtgccacgttggtggctccggctcctgag
gctgctgctgcatcgcgctatgccgacattgtcgtggatgtgaataacggcaaggttttg
cgcgccaccgatgctgacagcctgcgttatccggcatcgctcaccaagatgatgaccctg
tatctggttttcgaagcgctggagaaaggccggatccggttgaattcctctgttcccgtg
tcggcccatgctgcctccgagccaccatccaagcttggcctcaggcccggcggcagcttt
accgtagagcaaggcattcaggccctcgtcacccgctccgccaatgacgcggccactgcg
ttcggcgaatatctcggcggctccgaggctcgctttgcccagatgatgacatccaaggca
cgcgcacttggcatgtcgcggaccacctatcgcaatgcgaatggcctgccaaactccggc
cagatgaccacggcccgcgatcaggcgcgcctgggcatggcgctccggcagcattttccg
caatattacgcttacttttccacccgcagcttcacctatggtcgccaggtaatcggcaat
cacaatcgcctcatcggctcggtgcgcggcgtggacgggatcaagaccggctttaccaat
gcctccggattcaaccttgtgacctcgctgcagatcgatggtaaatccgtggttggcgtt
gtgctgggcggtgcctcaggtgccgcgcgcgacaatcaaatgcggaagctgatggcaacc
tatctgccggaagcctcccgtcgtggtagcgcaagtccgcttattgcccgccaaagcacc
gtgccggagccgatggcgcctgttgctcgcgaaaccgccgttgcaccgcaattgccgcaa
tccggtgtgcccgtacccggcggccgctatgacacaggtagcctgagtgaaacagcttat
gccggtggaggaggcgccaatgatgcggttgccgcccttgcgaagcaagcggaggcaagc
caggccctggaaacagaatcggctcccatgccgcagacccgcaaaagtgcgtcgcgccat
tccaaatcatctggccccaagccgccagccgatgtcgacaacacagtcacgttctccacc
aaggccccaactgcggcaccttcgggctggaccgtccagatcggtgtttcggatagccag
gaagcggcgatggacctgctgaaaagcgcccgtgccaagagcggtatttccctcaagggt
gcgcggcctttcgctatggcctatggcgagggagcatctcaggtctatcgcgcccggttt
gtcggcttcgatgatcagaagtctgcggtcaatgcctgcaatcgcttaaaaaaggcaggc
gtcagctgctgggccgcaatgcagtaa
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