Agrobacterium vitis VAT03-9: RvVAT039_32920
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Entry
RvVAT039_32920 CDS
T08809
Symbol
gcvP
Name
(GenBank) glycine dehydrogenase (decarboxylating)
KO
K00281
glycine cleavage system P protein (glycine dehydrogenase) [EC:
1.4.4.2
]
Organism
avv
Agrobacterium vitis VAT03-9
Pathway
avv00260
Glycine, serine and threonine metabolism
avv00630
Glyoxylate and dicarboxylate metabolism
avv00670
One carbon pool by folate
avv00785
Lipoic acid metabolism
avv01100
Metabolic pathways
avv01110
Biosynthesis of secondary metabolites
avv01200
Carbon metabolism
Module
avv_M00621
Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:
avv00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
RvVAT039_32920 (gcvP)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
RvVAT039_32920 (gcvP)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
RvVAT039_32920 (gcvP)
00670 One carbon pool by folate
RvVAT039_32920 (gcvP)
Enzymes [BR:
avv01000
]
1. Oxidoreductases
1.4 Acting on the CH-NH2 group of donors
1.4.4 With a disulfide as acceptor
1.4.4.2 glycine dehydrogenase (aminomethyl-transferring)
RvVAT039_32920 (gcvP)
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Gene cluster
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Motif
Pfam:
GDC-P
GcvP2_C
Beta_elim_lyase
Motif
Other DBs
NCBI-ProteinID:
BCH66076
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Position
1:complement(3554725..3557589)
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AA seq
954 aa
AA seq
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MTTPTEFQFTDYQPYDFANRRHIGPSPAEMDEMLKTVGYDSLDGLIAATVPASIRQSAPL
VWGKAMSEREALDKLRETANKNKALTSLIGQGYYGTITPPVIQRNILENPAWYTAYTPYQ
PEISQGRLEALLNFQTMICDLTGLDVANASLLDEATAAAEAMAMAERVAKSKAKAFFVDA
NCHPQTIAVIQTRAEPLGWGVVVGNPFTDLNPGEVFGALFQYPGTHGHVSDFTPLINALH
NAQAIAAVAADPLALLLLKSPGEMGADIAIGSSQRFGVPVGYGGPHAAYMAVKDAIKRSM
PGRLVGVSVDSRGNRAYRLSLQTREQHIRREKATSNICTAQVLLAVMASMYAVFHGPQGL
KAIAQQVHQKTVLLAKGLEKLGFTIEPETFFDTITLEVGHMQGLILRAAVAEGVNLRKVG
TTKIGISLDERTRPATLEAVWRAFGGNFAVGDFTPDYRLPTSLLRTSQYLTHPIFHMNRA
ESEMTRYIRRLSDRDLALDRAMIPLGSCTMKLNATAEMLPITWPEFSDIHPFAPADQALG
YKEMIDDLSEKLCAVTGYDAISMQPNSGAQGEYAGLLTIRNYHLAKGDTHRTVCLIPTSA
HGTNPASAQMAGMLVVPVKALDNGDVDLADFRGKAEQHSANLSCCMITYPSTHGVFEETV
REICEITHAHGGQVYLDGANMNAMVGISRPGDIGSDVSHLNLHKTFCIPHGGGGPGMGPI
GVKAHLTPYLPGHVETDGRPGAVSAAPYGSPSILPISWSYCLMMGGEGLTQATKVAILNA
NYIAARLTGAYDVLYTSASGRVAHECIIDTRPLADSAGVTVDDVAKRLIDCGFHAPTMSW
PVAGTLMIEPTESETKAELDRFCTAMLAIREEARAIEEGRMDKTNNPLKNAPHTVEDLVG
EWDRPYSRDQACYPPGAFRVYKYWSSVNRVDNVYGDRNLVCTCPPMSAYAEAAE
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atgaccacacccacagaattccagtttaccgattaccagccctacgattttgccaatcga
cgccacatcggcccctctccggctgaaatggacgagatgctgaagaccgtgggctatgac
agcctcgacgggttgattgccgccaccgttcccgcctccattcgccaatccgcgccgctg
gtgtggggcaaggcgatgagcgagcgcgaagcgttggacaagctgcgcgaaaccgccaac
aagaacaaggctttgacctctctgatcggtcagggctattacggcaccatcacgccgccc
gtgatccagcgcaatattctggaaaacccggcctggtacaccgcctacacgccttaccag
ccggaaatctcccaagggcgcttagaagcgctgctcaacttccaaaccatgatctgcgat
ctgaccgggctggacgttgccaacgcatccttgctggatgaggcaaccgcagctgctgaa
gccatggccatggccgagcgcgtggcaaagtccaaggccaaggccttctttgtcgatgcc
aattgccatccgcagaccattgctgtgatccagacccgcgccgagcctttgggctggggg
gtcgtggtcggcaatcccttcaccgatctcaaccccggcgaagtgtttggcgcgctgttt
caatatcccggcacgcacggccatgtcagcgatttcaccccgctgatcaacgccctgcac
aatgcgcaagccattgccgctgtggccgctgatccgctggcgctgctgctgctgaaatcc
cccggtgaaatgggtgccgatattgcaatcggttccagccagcgctttggcgttcccgtg
ggttatggtggaccacatgctgcctatatggcggtgaaggatgccatcaagcgttccatg
ccgggccgtcttgtgggcgtatcggtggattcgcgcggcaaccgcgcctatcgcctgtcg
ctccaaacgcgcgagcagcatatccgccgcgaaaaggccacgtccaacatctgcacagca
caggtgcttctggcggtcatggcctcgatgtatgcggtgttccacggtccgcaaggcttg
aaggccattgcccagcaggtgcatcagaaaaccgttctgctggccaagggcttggaaaag
ctcggctttaccattgagccggaaaccttctttgacaccatcacgctggaagtcggccat
atgcagggccttatcctgcgcgcagccgtggctgaaggcgtcaacttgcgcaaagtcggc
accacaaaaatcggcatctcgctggatgagcgcacccgcccagccacgctggaagccgtt
tggcgtgcctttggcggcaatttcgcggtgggtgatttcaccccggattatcgcttgccc
accagcctgctgcgcaccagccaatacctgacccacccgatcttccacatgaaccgggcg
gaaagcgaaatgacacgctacatccgccgtctgtcagatcgcgatctggcgctggatcgg
gcgatgattccgcttggctcctgcaccatgaagctgaacgccacagctgaaatgctgccg
atcacctggccggaattttccgacatccaccccttcgccccagccgatcaagccttgggc
tataaggaaatgatcgacgatctctcggaaaagctctgcgccgtcacgggctatgatgcg
atttcgatgcagccaaactctggcgcgcaaggcgaatatgcgggtcttttgaccatccgc
aactatcaccttgccaagggtgatacgcaccgcaccgtctgcctcattccaacatcggcc
catggcaccaacccggcatccgcccagatggcgggcatgttggtggtgccagtcaaggcg
ctggacaatggcgacgtcgatctggctgatttccgcggcaaagcagagcagcattccgca
aacctgtcttgctgcatgatcacctacccctccacccacggcgtgtttgaagaaaccgtg
cgggaaatctgcgagatcacccacgcccatggcgggcaggtctatcttgacggtgccaat
atgaacgccatggtcggcatttcccgccccggtgacattggctcggatgtttcccacctc
aacctgcacaaaaccttctgcattccacacggcggcggtggtccgggcatggggccgatt
ggcgtcaaagcccatctcaccccttatctgcccggccatgtggaaaccgatggtcgcccc
ggtgctgtgtcagccgccccttacggctcaccctccatccttcccatcagctggtcctac
tgcctgatgatgggtggcgagggcctcacacaagccaccaaggttgccatcctcaacgcc
aactacatcgccgcccgcctcactggggcctatgatgtgctctacacctcggcctcaggc
cgggtggcgcatgagtgcatcatcgacacccgcccgctggctgacagcgctggcgtaaca
gtcgatgacgttgccaaacgcctgatcgactgcggcttccacgcccccaccatgagctgg
cccgtggctggcacgctgatgattgaaccaacagaatcggaaaccaaagccgaactggac
cgcttctgcaccgccatgctggccatccgcgaggaagcccgcgccatcgaagaaggccgg
atggacaagaccaacaacccgctgaaaaacgcaccccacacggtggaagatctggtaggc
gaatgggatcgtccttacagccgcgatcaggcctgctacccaccgggcgcgttccgcgtg
tacaaatactggtcttccgtcaaccgcgtggacaatgtctacggcgaccgcaatctggtc
tgcacctgcccgccgatgagcgcgtatgcggaggctgccgagtaa
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