Agrobacterium vitis VAT03-9: RvVAT039_33150
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Entry
RvVAT039_33150 CDS
T08809
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
avv
Agrobacterium vitis VAT03-9
Pathway
avv03410
Base excision repair
avv03430
Mismatch repair
avv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
avv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RvVAT039_33150 (recJ)
03430 Mismatch repair
RvVAT039_33150 (recJ)
03440 Homologous recombination
RvVAT039_33150 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
avv03400
]
RvVAT039_33150 (recJ)
DNA repair and recombination proteins [BR:
avv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
RvVAT039_33150 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
RvVAT039_33150 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RvVAT039_33150 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
BCH66099
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All DBs
Position
1:3577865..3579667
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AA seq
600 aa
AA seq
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MLEPADPIERAFLNVETSVSGQRWVSRLDQAGLNRSLAIAQVHGIPDLVARVLAGRGVAV
ADAQAFLDPTIRDLMPDPSSLTDGDKAADRLVAAIMRSERVAIFGDYDVDGAASSALLWR
FLAHFGIEAEIYIPDRIFEGYGPNAAAIGQLIERGAQLIVTVDCGSTSHDALEEARRRSV
DVVVIDHHQMGQDLPACLALVNPNRSDDLSGQGHLCAAGVVFMVLVGTLRKLREAGHGAA
RSLDLLAWLDLVALATVCDVVPLKGLNRAYVVKGLIAARHQQNAGLAALLKIAGIGGPVT
PYHFGFLVGPRINAGGRIGDAALGSRLLTLDDAAEADEIAAQLDDLNRQRQAMEAQMLAE
AEAEAMAEYGTGENAAVILTAREGWHPGIVGLLAARLKERFQRPAFAIAFDGSGKGTGSG
RSIAGFDMGKMVRAAVDNGLLVKGGGHAMAAGLTVERGNLGKLRAFFDEQAQEKVMALSA
IRALKIDGAVGASGATLALIDLLETAGPYGSGHSQPIFAIPAHRIRDSRLIGTSHVKVTL
EAPDGSRIDGIAFRAKETPLGDLLLGRRGDAVHVAGCLGAELWQGTRRIQIRILDAAPAF
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgcttgaacccgccgacccgatcgaacgcgcctttttgaatgtcgagacctcggtcagc
ggtcagcgctgggtgtctcggctggatcaggctgggctgaacaggtcactggcgatagcg
caggtgcacggcattcccgatctggtggcgcgtgttctggccgggcggggtgtggcggtt
gccgatgcgcaagcctttctcgatccgaccatccgcgatttgatgcccgatccctccagc
ctgaccgatggtgacaaggccgcggaccggctggtggcggcaatcatgcgctctgagcgc
gtggcgatttttggcgattatgatgtcgatggggctgcttcgtcggcgctcttgtggcgg
tttctcgcgcatttcggtattgaggccgaaatctatattcctgaccgaattttcgaaggc
tatggcccgaatgccgctgccatcggccagttgatcgagcgcggcgcgcaattgatcgtt
acggtggattgcggctcgaccagccacgatgcgcttgaggaggccagacgcagaagcgtc
gatgtggtggtgatcgaccatcaccagatgggccaggatttgcccgcctgtctggcattg
gtcaatcccaacaggagcgacgatctgtcaggacagggccacctctgcgcagcgggcgta
gtgttcatggtgctggtgggaacgctgcgcaagctgcgtgaggctggtcatggtgccgct
cgctcgctcgatttgctggcctggctggatctggtggcgctggcgacggtctgcgatgtc
gtgccgctgaaggggttgaaccgcgcctatgtggtgaaaggcttgattgccgcccgccat
cagcaaaatgccggtcttgcagcccttctgaagatcgccgggattggcggcccggtgacg
ccttatcattttggcttcctggttgggccaagaatcaatgccggaggccggatcggcgat
gcggcgctgggcagccggttgctgacgctggacgacgctgccgaggccgatgaaatcgcc
gcccaactggatgatctgaaccgccaacgtcaggcgatggaagcgcagatgctggccgag
gcggaagccgaggccatggccgaatatggcaccggcgagaatgccgccgtgattctcaca
gcccgggaaggctggcatcccggcattgtcgggctgctggcggcccgtcttaaagagcga
ttccaacggcctgcctttgccattgccttcgatggatcaggcaaggggacaggctccggc
cggtccattgccggtttcgacatgggaaagatggtgcgtgcggcggtggacaatggcctg
ctggtcaagggcggcggccacgcgatggccgcagggctgacggtagagcgtggcaatctc
ggcaagttgcgggcgttttttgatgaacaggcgcaggaaaaggtcatggcgctctccgcc
atcagggccttgaagattgatggtgcggttggcgcatccggtgcgacgcttgcgttgatc
gacctcctggaaaccgccggaccctatggctccggccattctcagccgatctttgccatc
ccagcccaccgcattcgcgattctcggctgattggcaccagccacgttaaggtcacgctg
gaagcaccagatggcagccgaatcgacggcattgcctttcgcgccaaggaaacgccgctc
ggtgatctcctgctcggacgccgaggcgacgccgtgcatgtcgccggctgccttggcgcc
gaactctggcaaggcacgcgccgtattcagatccgtattctggatgcagcgccagcgttt
tga
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