Agrobacterium vitis VAT03-9: RvVAT039_33340
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Entry
RvVAT039_33340 CDS
T08809
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
avv
Agrobacterium vitis VAT03-9
Pathway
avv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
avv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RvVAT039_33340 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
avv03400
]
RvVAT039_33340 (mfd)
Enzymes [BR:
avv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RvVAT039_33340 (mfd)
DNA repair and recombination proteins [BR:
avv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RvVAT039_33340 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
MFD_D3
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
BCH66118
LinkDB
All DBs
Position
1:3598514..3602041
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AA seq
1175 aa
AA seq
DB search
MISLFDAKKTAAAASAVTLSPVPDGMDAFLVAELARQGRPVAYLLSDSSRMNDIEQMLGF
CAPDIPVLTLPAWDCLPYDRVSPSADISARRLSALSGLIAHARKPHPGIVLVTANAMLQK
LAPADVIESLSFSARPGNQVKMDDIAARLSRNGFERVDTVREVGEFAVRGGILDVFVPGS
EEPVRLDFFGDTLESIRSFDPASQRTIGQVRSLDLNPMSEVTLTPESISRFRKNYLSLFG
AATRDDALYTAVSEGRRYAGMEHWMPLFHEKLETVFDYLTDFRVVLDHTVRESAEERGKL
IRDYYEARLNSATPGKGHLAQGTLYKPIPPEYLYLGAAEFAKKLEALNPIRLTPFAEPDS
EGRKIVELSARSGPRWAKLAAQESSETKADGEAQRVNVFTQAVKYISDKRASGSKVLITG
WSEGSLDRLLQVLNEHGLERLKPVSALKDLDQLGKGHAATAVLALEGGFEAGELVVVGEQ
DILGDRMVRRSKRRKRAADFISEVAGLDEGSIVVHAEHGIGRFIGLRTIQAAGSQHACLE
LQYADEAKLFLPVENIELLSRYGSEGSEAQLDKLGGGAWQMRKAKLKKRLLDMAGGLIRI
AAERMMRSAPVLATTEGFYDEFAARFPYEETEDQMNAIEAVRGDLAAGRPMDRLICGDVG
FGKTEVALRAAFVAAMNGIQVAVVVPTTLLARQHFKTFSERFRGLPIRIQQASRLVGTKE
LNLVKKEVAEGKTDIVVGTHALLGSGIKFANLGLLVIDEEQHFGVKHKERLKELKSDVHV
LTLSATPIPRTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDPLVIRETLMREHYRGGQ
SFYVCPRLADLADIKAFLESDVPELKVAIAHGQMAAGELEDIMNAFYEGRYDVLLSTTIV
ESGLDVPTANTLIVHRADMFGLAQLYQIRGRVGRSKVRAFALLTLPVNKVLTTSAERRLK
VLQSLDTLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGEDE
VVDSGWSPQIQVGTSVMIPDEYVPDLHLRLGLYRRLGELTELNDIDGFGAELIDRFGPLP
AEVQNLLKVVYVKALCRKANVEKLEAGPKGVVVQFRNKLFPNPAALVGFIAKQGSMAKIR
PDHSVFLTRDLPTPEKRLAGAATIMAQLAELAKVK
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgatttccctgtttgatgcaaagaagacggcagcggctgcgtccgctgtcaccctctcg
cctgtgcctgatggcatggacgcttttctggtggcggaactggcgcggcagggcaggcct
gtcgcctatcttctgtcggattccagccggatgaatgatatcgagcagatgctcggcttc
tgtgcgcctgatattccggtgctgaccctgcctgcctgggattgcctgccctatgaccgg
gtttcgcccagcgccgatatttccgcccgcaggctttcggcgctgtcggggctgattgcc
catgcccgaaagccacatccaggcattgttcttgtcaccgccaatgccatgctgcaaaag
ctggcaccggctgacgttatcgaaagcctgtccttttcggcccgccccggcaatcaggtg
aagatggacgacattgccgcccgcttgtcgcgtaatggttttgagcgcgtcgataccgtg
cgagaagtcggcgaatttgcggtgcgtggcggtattcttgacgtcttcgtgccgggctct
gaggagccggtgcggctggatttctttggtgatacgctggaaagtatccgcagtttcgat
ccagccagccagcgcactatcggtcaggtccgctcactggacctcaacccgatgagcgaa
gtgacgttgacgccggaaagtatcagccggtttcgcaagaattacctgtcgctgtttggc
gcggccacccgcgacgatgcgctgtacaccgccgtgtccgaaggccgccgttatgcgggc
atggaacactggatgccgctgtttcatgaaaagctggagacggtgttcgactatctcacc
gatttccgggtggtcctcgaccatacggtgcgcgaatccgccgaagaacgcggcaagctg
atccgcgactattatgaggcgcgtttgaacagcgcgacacccggcaagggccatctggcg
cagggcacgctttataaaccgataccgccggaatatctgtatctgggggcggcggagttt
gccaagaagctagaagcgctgaacccgatccgtctgacaccgtttgccgagccggatagc
gagggccgcaagattgtcgaactctcggctcgttccggcccgcgctgggcgaagctggct
gcgcaggaaagcagcgagaccaaggctgatggcgaggcgcaacgggtcaatgtctttacc
caggcagtaaaatatatttccgacaagcgggcttccggctccaaggtgctgattaccggc
tggtcggaaggttcgctcgaccggctgttgcaggtgttgaacgagcacgggctggaacgg
ctgaagccagtgtcagccctgaaggatctcgaccagcttggcaagggtcatgcggcaacc
gccgtcctggcgcttgagggcgggttcgaggcgggcgaactcgtggtggtcggcgagcag
gatatcctcggcgaccgcatggtgcgccggtccaagcgtcgcaagcgggcagccgatttt
atttcggaagtggccgggctggatgaaggctcgatcgttgttcatgcagagcatggcatt
ggccggtttatcggattgcgcaccatccaggcggcgggcagccagcatgcttgtttggaa
ctgcaatatgccgatgaggccaagctgttcctgccggtcgaaaatatcgagcttctatcc
cgttatggttcggaaggcagcgaagcgcaattggacaagctgggcggcggcgcctggcag
atgcgtaaggccaagctgaagaaacgcctgctggatatggcaggcgggctgatccgtatc
gccgccgagcggatgatgcggtccgcaccggtgcttgccacgactgaaggcttctacgac
gaatttgccgcgcggttcccctatgaggaaaccgaggatcagatgaatgccatcgaggcg
gtgcgcggcgatctggctgccggacgtccgatggaccggctgatctgcggcgatgttggc
ttcggcaagacggaagttgcgctgcgcgccgccttcgtggcagcgatgaacggtattcag
gtggcggtcgtggttccgaccacgctgcttgcccgccagcatttcaaaacattttccgaa
cggtttcgcggtctgccaatccgcatccagcaggcctcgcggctggtcggtaccaaggag
ttgaacctcgtcaagaaggaagtggctgagggcaagaccgatattgtcgtcggcacccat
gctctcctggggtcgggcataaaattcgccaatcttggcctgctggtgattgatgaagag
cagcatttcggcgtcaagcacaaggaacggctgaaagagttgaagagcgacgtgcatgtg
ctgacgctctcggcgacgcccattccgcgcaccttgcagctggcgatgaccggcgtgcgc
gaattgtcgctgatcaccacgccgccggtggaccgtatggcggtgcgcaccttcatttcg
cccttcgatccgctggtgatccgcgaaacgttgatgcgtgaacattatcgcggcggccag
agcttttatgtctgcccgcgtctggcggatcttgccgatatcaaggcatttctggagtcg
gatgtgccggaattgaaagtggcgattgcccatggccagatggcggcgggcgaactggaa
gacatcatgaacgccttctatgaaggccgctatgatgttctgctgtccaccaccatcgtt
gaatccggtcttgatgtgccgaccgcaaatactctcattgtccaccgcgccgatatgttc
ggccttgcccagctctaccagatccggggccgggtcggccgctccaaggtgcgggccttc
gcgctgctgaccctgccggtcaacaaggtactgacgaccagcgccgaacggcggctgaaa
gtgctgcaatcgctggatacgctgggcgcgggcttccagctcgccagccacgatctcgac
attcgcggcgctggcaatttgctgggcgaggaacaatccggccacatcaaggaagtcggc
ttcgagctttaccagcaaatgctggaggaggccgtggccgaggtgaagggcgaggacgaa
gtggtcgatagcggctggtcgccgcaaattcaggtcggcacctcggtgatgatccccgac
gaatacgtgccggacctgcatctgcgtcttggcctataccgccgcttgggcgaattgacc
gagttgaacgatatcgacggcttcggtgccgagttgatcgaccggttcgggccgctgcca
gcggaagtgcagaatctgttgaaggtggtctatgtcaaggcgctgtgccgcaaggccaat
gtcgaaaagctggaagccggtccgaagggcgtcgtagtccagttccgcaacaagctgttc
cccaacccggcagctttggtcggcttcattgccaaacagggcagcatggccaagatccgt
cccgaccacagcgtcttcctgacgcgagatctgccgacgccggaaaagcggctggcgggt
gcggcgaccatcatggcgcaattggcggaactggccaaggtgaagtga
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