Agrobacterium vitis VAT03-9: RvVAT039_33940
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Entry
RvVAT039_33940 CDS
T08809
Symbol
nifS_2
Name
(GenBank) cysteine desulfurase
KO
K11717
cysteine desulfurase / selenocysteine lyase [EC:
2.8.1.7
4.4.1.16
]
Organism
avv
Agrobacterium vitis VAT03-9
Pathway
avv00450
Selenocompound metabolism
avv01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
avv00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00450 Selenocompound metabolism
RvVAT039_33940 (nifS_2)
Enzymes [BR:
avv01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.1 Sulfurtransferases
2.8.1.7 cysteine desulfurase
RvVAT039_33940 (nifS_2)
4. Lyases
4.4 Carbon-sulfur lyases
4.4.1 Carbon-sulfur lyases (only sub-subclass identified to date)
4.4.1.16 selenocysteine lyase
RvVAT039_33940 (nifS_2)
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Gene cluster
GFIT
Motif
Pfam:
Aminotran_5
Aminotran_1_2
Beta_elim_lyase
DegT_DnrJ_EryC1
Cys_Met_Meta_PP
SelA
Motif
Other DBs
NCBI-ProteinID:
BCH66178
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Position
1:3670753..3672003
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AA seq
416 aa
AA seq
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MTLNLAKLPSTYDVEAVRKDFPILSRLVHGDKPLVYLDNGASAQKPQVVIDAISHAYSNE
YANVHRGLHFLSNAATDAYEAAREKVRRFLNAGSVDEVIFTKSSTEAINTVAYGHGMKEI
GEGDEILLTIMEHHSNIVPWHFLRERKGAKLVWVPVDDDGAFHIEEFEKRLTDRTKLIAV
THMSNALGTVVPVKEICRIARERGIPVLVDGSQAAVHMPVDVQDIDCDWYVMTGHKLYGP
SGIGVLYGKMDRLRAMQPFMGGGEMIVDVTEDMVTYNDPPHRFEAGTPPIVQAIGLGHAL
DYIEGLGREAIAAHEADLTAYAHERLTAINSLRIFGNAPGKGAIFSFELKGIHAHDVSML
IDRRGVAVRAGTHCAQPLLSRFGVTSTCRASFGLYNTREEIDALVEALDYAKTFFG
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgacgcttaatctggcgaaacttccatcgacctatgatgtcgaggccgtccgaaaggac
ttcccgatcctgtcgcggctggtgcatggcgataaaccgctggtctacctggacaacggt
gcgtctgcgcaaaaaccccaggtggtgatcgatgccatcagccatgcctattccaacgaa
tatgccaatgtgcatcgcggcctgcattttctgtccaatgccgcgaccgatgcttatgag
gcagcccgcgaaaaggtgcggcgttttctgaatgccggatcggtggacgaggtgattttc
accaagtcttcaaccgaagctatcaatacggtggcctacggccatggcatgaaggagatc
ggcgagggcgatgaaatcctcctgaccatcatggagcatcactcaaacatcgtgccctgg
catttcctgcgggaacgcaagggtgcaaagctggtctgggtgccggtggatgatgatggt
gcgttccacatcgaggaattcgaaaagcggctgaccgaccgtaccaagcttattgccgtc
acccatatgtccaatgcgctcggaaccgtggttccggtcaaggagatttgccggatcgcc
agggagcgcggcattccggtgctggtcgatggcagccaggcggcggtgcatatgccggtg
gatgtgcaagatatcgactgcgactggtatgtgatgaccggccacaagctttacggccca
tccggcatcggcgtgctctatggcaagatggaccggttgcgcgccatgcagcccttcatg
ggcggcggcgaaatgattgtcgatgtcaccgaggatatggtgacgtacaatgatccgccg
catcggtttgaggcaggaacgccgccaattgttcaggccatcgggcttggccatgcgctg
gattatatcgagggtcttggccgcgaggcgattgccgctcacgaggccgatttgaccgcc
tacgcccatgagcggctgacggcgatcaattcgctgcggattttcggcaacgcaccgggc
aagggcgcgattttttccttcgagctcaagggtatccacgcccatgatgtctcgatgctg
atcgaccggcgcggtgtggccgttcgggctggcacgcattgcgcccagccattgctgtcg
cgtttcggtgttacctctacctgccgggcctcttttggcctatataatacccgtgaagaa
atcgatgcgctggtggaagcgcttgactatgccaagaccttcttcggctga
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