Agrobacterium vitis VAT03-9: RvVAT039_41470
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Entry
RvVAT039_41470 CDS
T08809
Symbol
groL
Name
(GenBank) 60 kDa chaperonin
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
avv
Agrobacterium vitis VAT03-9
Pathway
avv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
avv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RvVAT039_41470 (groL)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avv03019
]
RvVAT039_41470 (groL)
03110 Chaperones and folding catalysts [BR:
avv03110
]
RvVAT039_41470 (groL)
03029 Mitochondrial biogenesis [BR:
avv03029
]
RvVAT039_41470 (groL)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
avv04147
]
RvVAT039_41470 (groL)
Enzymes [BR:
avv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
RvVAT039_41470 (groL)
Messenger RNA biogenesis [BR:
avv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
RvVAT039_41470 (groL)
Chaperones and folding catalysts [BR:
avv03110
]
Heat shock proteins
HSP60 / Chaperonin
RvVAT039_41470 (groL)
Mitochondrial biogenesis [BR:
avv03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
RvVAT039_41470 (groL)
Exosome [BR:
avv04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
RvVAT039_41470 (groL)
Exosomal proteins of other body fluids (saliva and urine)
RvVAT039_41470 (groL)
Exosomal proteins of breast cancer cells
RvVAT039_41470 (groL)
Exosomal proteins of colorectal cancer cells
RvVAT039_41470 (groL)
Exosomal proteins of bladder cancer cells
RvVAT039_41470 (groL)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
DUF4142
Motif
Other DBs
NCBI-ProteinID:
BCH66931
LinkDB
All DBs
Position
2:856297..857940
Genome browser
AA seq
547 aa
AA seq
DB search
MAAKEIKFGRTAREKMLHGVDILADAVKVTLGPKGRNVIIDKSFGAPRITKDGVSVAKEI
ELEDKFENMGAQMVREVASKTNDIAGDGTTTATVLAQAIVREGNKAVAAGMNPMDLKRGI
DLAVAEVVKDLQAKAKKISTSEEVAQVGTISANGDTQVGKDIAEAMQKVGNEGVITVEEA
KTAETELEVVEGMQFDRGYLSPYFVTNPEKMVADLEDAYVLLHEKKLSNLQAMLPVLEAV
VQTGKPLVIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLEDIAILTGGTV
ISEDLGIKLETVTLDMLGRAKKISITKENTTIVDGAGQKSDIEGRVAQIKAQIEETSSDY
DREKLQERLAKLAGGVAVIRVGGSTEIEVKERKDRIDDALNATRAAVQEGIVPGGGTALL
RSSTKITVKGVNDDQEAGINIVRRALQSLVRQIATNAGDEASIIVGKILDKDNDNYGYNA
QTGEFGDMIAMGIVDPVKVVRTALQNAASVASLLITTEAMIAELPKKDSAGGGMPDMGGM
GGMGGMM
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atggctgctaaagaaatcaagtttggccgcactgcgcgcgaaaagatgctgcacggcgtt
gatatccttgctgacgctgtaaaggtaaccctcggccccaagggtcgtaacgttatcatc
gacaagtcgttcggcgctccgcgcatcaccaaggacggtgtctcggttgccaaggaaatc
gaactggaagacaagttcgaaaacatgggcgcacagatggttcgggaagttgcttccaag
accaacgacatcgcaggcgacggcaccaccactgctaccgttctggcccaggctatcgtg
cgcgaaggcaacaaggctgttgctgccggcatgaacccaatggacctgaagcgcggcatc
gatctggctgttgctgaagttgtgaaggaccttcaggccaaggccaagaagatctccacc
tctgaagaagttgctcaggttggtacgatctctgctaacggcgacacgcaggttggtaaa
gacattgctgaagccatgcagaaggttggcaacgaaggtgtaatcaccgtcgaagaagcc
aagaccgctgaaaccgaactggaagtcgttgaaggcatgcagttcgaccgcggctacctg
tcgccttacttcgtcaccaaccctgaaaagatggttgctgacctggaagacgcctacgtt
ctgctgcacgaaaagaagctctccaacttgcaggctatgctgccagttctggaagctgtt
gtgcagaccggcaagccactcgtcatcatcgctgaagacgttgaaggcgaagctcttgca
acgctggttgtcaacaagctgcgtggcggcctgaagattgctgctgtcaaggctcctggc
ttcggcgatcgccgcaaggctatgctggaagacatcgctatcctcaccggtggtactgtt
atttccgaagacctcggcatcaagctcgaaactgtcaccctcgacatgctcggccgcgcc
aagaagatttccatcaccaaggaaaacaccaccatcgttgatggcgctggtcagaagtcc
gacatcgaaggccgcgttgcccagatcaaggctcagatcgaagaaacgtcttccgattac
gaccgcgaaaagcttcaggaacgtctggccaagctcgctggcggcgttgccgtgatccgc
gttggcggctcgacggaaatcgaagtgaaggaacgcaaggaccgcatcgacgacgctctg
aacgcaacacgcgctgctgttcaggaaggcatcgttcctggcggcggtacagctctgctg
cgctcctccaccaagatcactgttaagggtgtaaacgacgaccaggaagctggcatcaac
atcgttcgccgtgctctgcagtctctggttcgccagattgcaacaaacgcaggcgacgaa
gcttcgatcatcgttggcaagatcctcgacaaggacaacgacaactacggctacaatgcc
cagaccggcgagtttggtgacatgattgccatgggtatcgttgacccggttaaggttgtt
cgcacagccctgcagaacgcagcttcggttgcttcgctgctgatcaccacggaagccatg
attgctgaactgccgaagaaggattcggctggcggcggcatgcctgacatgggcggcatg
ggcggcatgggtggtatgatgtaa
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