Agrobacterium vitis VAT03-9: RvVAT039_41960
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Entry
RvVAT039_41960 CDS
T08809
Symbol
nirB
Name
(GenBank) nitrite reductase large subunit
KO
K26139
nitrite reductase [NAD(P)H] large subunit [EC:
1.7.1.4
]
Organism
avv
Agrobacterium vitis VAT03-9
Pathway
avv00910
Nitrogen metabolism
avv01100
Metabolic pathways
avv01120
Microbial metabolism in diverse environments
avv01310
Nitrogen cycle
Module
avv_M00531
Assimilatory nitrate reduction, nitrate => ammonia
avv_M00615
Nitrate assimilation
Brite
KEGG Orthology (KO) [BR:
avv00001
]
09100 Metabolism
09102 Energy metabolism
00910 Nitrogen metabolism
RvVAT039_41960 (nirB)
Enzymes [BR:
avv01000
]
1. Oxidoreductases
1.7 Acting on other nitrogenous compounds as donors
1.7.1 With NAD+ or NADP+ as acceptor
1.7.1.4 nitrite reductase [NAD(P)H]
RvVAT039_41960 (nirB)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Pyr_redox_2
NIR_SIR
Fer2_BFD
Pyr_redox
Rubredoxin_C
NIR_SIR_ferr
Pyr_redox_3
DAO
GIDA
NAD_binding_8
FAD_binding_2
AlaDh_PNT_C
3HCDH_N
FAD_binding_3
Trp_halogenase
Motif
Other DBs
NCBI-ProteinID:
BCH66980
LinkDB
All DBs
Position
2:complement(912134..914581)
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AA seq
815 aa
AA seq
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MAEKLVIIGNGMAPGRMLEELFEKAPGLYDVTVFNAEPRVNYDRIMLSPVLSGEKAYEDI
IIHNDQWYETHGVTLHRGAKVSGIDRQAKTVTSENGITAAYDKLVIATGSLPFIIPVPGH
QLPGVLAYRDLDDVEKMLEISKGQGRAIIIGAGLLGLEAAYGLKRQGMDVTVIHLMPTIM
ERQLDPAAAYLLEKALSERGIEIITKANTKAILGTDKVEGIELEDGRVISGDMAVMAVGI
RPASQLAKDAGLAVNRGIVVDDGMQTSDASIFALGECAEHRGMCYGLVAPLYESARVLAD
RLTGGQAEYHGSVVNTKLKVTGINLFSAGDFAEAPDREEIVLRDASSGIYKRLVLKDNRI
IGAVLYGETGDGSWFFDLMKRGTDISQMRDTLIFGQSYQGGTPLDPMAAVAALPDDAEIC
GCNGVCKGKIVSTITGKGLTSLDEVRAHTKASASCGNCTGLVEQVMALTLGDAYNPKAVT
PICACTDLGHDDVRRLIKAKGLKTIPAVMQELEWKSSCGCAKCRPALNYYLVCDWPDEYA
DDYQSRFINERVHANIQKDGTYSVVPRMWGGVTNAAELRAIADVVDKFDIPMVKVTGGQR
IDLLGIEKEDLPAVWADLGKAGFVSGQAYAKGLRTVKTCVGSDWCRFGTQDSTGLGIKIE
KFMWGSWTPAKLKLAVSGCPRNCAEATCKDIGVICVDSGFEIHFAGAAGLDIKGTDVLGL
VKTEEEALEHIVALTQMYREQGRYLERIYKWAKRIGHDEVRRQIMEDETKRKAYFDRFVF
SQKFAQVDPWSERVSGKDKHEFKPMATIGYTQAAE
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atggcggaaaaacttgtcatcatcggcaatggcatggcaccgggccggatgctggaagag
ctgtttgaaaaagcacccggcctttatgacgtcaccgttttcaatgccgagccgcgcgtc
aattacgaccgcatcatgctctcgccggtgctgtcgggcgaaaaagcctatgaagacatc
atcatccataacgatcaatggtatgaaacccatggcgtaaccctgcatcgcggcgcgaaa
gtctccggcatcgaccggcaggcaaaaaccgtgacctcggaaaacggcatcaccgccgcc
tatgacaaactggtgatcgccaccggctccctgcccttcatcatcccggttcccggccat
caattgcccggcgtgctcgcctatcgggatctcgatgatgtcgagaaaatgctggagatc
agcaagggccaaggccgggccatcatcatcggcgcggggctgctcggacttgaagccgcc
tatggcttgaagcgtcagggcatggatgtcaccgtcattcacttgatgccgaccatcatg
gaacgccagctcgaccccgccgccgcctatcttctggaaaaggcgctgagcgaacggggt
atcgaaatcatcaccaaggccaataccaaggcgatcctcggtacggataaagtcgaaggc
atcgagcttgaagacggccgggtgatttcaggcgacatggcggtgatggcggttggaatc
cgtccggcttcacaactggccaaggatgccgggcttgccgtcaatcgcggcattgttgtc
gatgacggtatgcagacatcggacgcttcgatctttgcgcttggcgaatgcgctgaacat
cgcggcatgtgctacggtctggtcgcgccgctctatgaaagcgcccgggtgctggccgat
aggctgactggcggtcaggccgaatatcacggctctgtcgtcaataccaagctgaaggtc
accggcatcaacctattttcagctggcgactttgcagaagccccggaccgcgaagaaatc
gtgctgcgcgatgcctcatccggcatctacaagcggctggtgctgaaggataatcgcatt
atcggcgccgtgctttacggcgaaaccggcgatggctcttggttcttcgatctgatgaag
cgcggcaccgatatttcgcagatgcgcgacacccttattttcggccagtcctatcagggg
ggtacaccgctggaccctatggcggccgttgcagccttgccggatgatgcggaaatctgc
ggctgcaacggcgtctgcaagggcaagatcgtctcgaccatcaccggcaaaggcctgacc
tcgctggatgaggttcgcgcccatacgaaagcctccgcctcctgcggcaattgtacaggc
cttgtcgagcaggtcatggcgctgacgttgggtgatgcctataacccaaaggccgtcacg
ccgatttgcgcctgcaccgaccttggtcacgacgacgtgcgccggttgatcaaggccaag
gggctgaagaccattcccgccgtcatgcaggagctggaatggaaaagctcctgcggttgc
gccaaatgccgcccggcgctcaactattacctcgtctgcgattggccggacgaatatgcc
gatgactaccagtcgcggttcatcaatgagcgtgtccacgccaatattcagaaggacggc
acctattcggtcgtgccacgcatgtggggcggcgttaccaatgccgccgaactgcgcgcc
attgccgatgtggtcgataagttcgacatccctatggtcaaggttacgggcggccagcgc
atcgaccttctgggcatcgaaaaggaagacctgcccgccgtctgggccgatctcggcaag
gcaggctttgtctccggccaggcctatgccaaggggctgcgcacggttaagacctgcgtt
ggctccgactggtgccggttcggcacgcaggattccaccgggcttggcataaagattgaa
aaattcatgtggggctcctggacacccgccaagttgaaactggccgtctccggctgtccg
cgcaactgcgctgaggcgacctgcaaggatatcggtgtcatctgtgtggattccgggttt
gagatccatttcgccggagcagccggtctcgatatcaagggtaccgatgttcttggcctg
gtcaaaaccgaggaagaagcgctggaacatatcgttgcgctgacccagatgtaccgcgaa
caaggccgctatctggagcggatctataaatgggcaaaacgcattggccatgacgaggtc
cgccgccagatcatggaggatgaaaccaagcgcaaggcctatttcgaccgcttcgttttc
agccagaagtttgcccaggtcgatccctggtcggagcgggtctccggcaaggacaagcat
gagtttaagccgatggcgaccatcggttacacccaggcagcggagtga
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