Agrobacterium vitis VAT03-9: RvVAT039_42420
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Entry
RvVAT039_42420 CDS
T08809
Symbol
secD2
Name
(GenBank) protein translocase subunit SecDF
KO
K12257
SecD/SecF fusion protein
Organism
avv
Agrobacterium vitis VAT03-9
Pathway
avv02024
Quorum sensing
avv03060
Protein export
avv03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
avv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03060 Protein export
RvVAT039_42420 (secD2)
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
RvVAT039_42420 (secD2)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
RvVAT039_42420 (secD2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
avv02044
]
RvVAT039_42420 (secD2)
Secretion system [BR:
avv02044
]
Sec (secretion) system
Prokaryotic Sec-SRP core components
RvVAT039_42420 (secD2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SecD_SecF_C
SecDF_P1_head
SecD_1st
Sec_GG
ACR_tran
MMPL
Sterol-sensing
GGDEF
Motif
Other DBs
NCBI-ProteinID:
BCH67026
LinkDB
All DBs
Position
2:971460..973979
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AA seq
839 aa
AA seq
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MKTSPWLVATYVVIIAFGILTALPNILSPNTLNSFPSWFPKDKVALGLDLRGGSHLVLEV
DSADLVQERLQSLIQDSRRALRDDGVDAATVRKSGSALVVTLQSAEQRAAALTALGKLAH
PVGLTGAPDLAFTGEGTTISVTLAEAGITDRANAGVEQSLEIIRQRIDQVGVAEPTIQRI
GGDRILVQLPGTQDPARIRELLGSTAKMSFHMLSENATDGAAVPRGVTMLKDDEGRAYPV
DDRVELAGDRLTDARVGFDPNTNEPLVSFRFDTAGAARFAEITRANVGKPFAIVLDDKVL
SAPVIREPITGGSGQISGNFTVESATDLAALLRAGALPVKLTVIEERTVGADLGADAIKM
GVYTGLIGFALVVGFMIVLYGGWGIIANLALGLNVILTFACLSLIGATLTLPGIAGIVLG
IGLAVDANVLINERIREETRKGRGAMAALDAGFRRAYSTIIDSNVTALIATLLLFWFGSG
PVRGFAITMGLGIAISMFTAVSVVRVVMLAIVRRYKLKRLDIKPLLPLQLIPDGTRIRFM
RARFVGIGISAFLSIASLILFVTPGLNYGVDFRGGIQLEVVTQDRADLAAFRSGLDGLGL
GDVTLQEFGDARHLLVRVERQPGGEEAQTAAVERLRTEVKVIDATASVERTEVVGPKVSG
ELATAGILSVVLASLAMLAYIWARFEWPFAVGAIATLILDVTKTIGFFALTGLDFNLTAI
AALLTLVGYSVNDKVVVYDRMRENMRLYKTMPLRELIDLSINETLARSLYTSATAFLSLL
PMAIWGGSAVESFAVPMIFGIAIAASSSVFIAAPILLFLGDWRRKRAAVPEKSAGSVEA
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacctctccctggcttgtggccacctatgtggtcatcatcgcctttggcatccta
acggcactgccgaatattctgtcgccaaacactctcaatagctttccctcctggttcccg
aaggacaaggtcgcacttggccttgaccttcgcggcggctctcatctcgtgcttgaggtc
gatagcgccgatctggtgcaggaaagactgcaaagcctgatccaagattcccgccgtgcg
ctgcgtgacgatggcgttgatgcggcgacagtgcgcaagagcggctcggcgctggtcgtg
acccttcagtcggcagagcaaagagccgcagccttgaccgccttgggtaagcttgcccat
ccggtcggcctgacgggcgcgcctgatctggcgtttacgggcgagggcaccaccatatcc
gtaacgcttgccgaggccggaattaccgaccgcgccaatgccggggttgagcagagcctg
gaaatcattcgtcagcgtatcgaccaggttggcgttgccgaaccgacgatccagcgcatc
ggcggcgatcgtatcctcgttcagcttccgggtacgcaggacccggcgcgcattcgtgaa
cttctgggctctaccgccaagatgagctttcacatgctgtcggaaaatgccacggatggc
gcagccgtaccgcgcggcgtcaccatgctgaaggacgatgagggccgcgcctatccggtt
gatgatcgggtggaactggcaggcgaccgtctgaccgatgcccgcgtcggcttcgatccg
aacactaatgagccgctggtcagtttccgcttcgatacggcaggtgcggcgcgttttgcg
gaaattacccgtgccaatgtcggcaagccttttgccattgtgctggacgacaaggttttg
tcggcccctgtcatccgtgagccgattaccggtggttccgggcagatttccgggaatttc
acggtggaaagcgcaacggacctcgctgcattgctgcgcgccggggcgttgcccgtcaag
ctcacggtcattgaagagcggacggttggtgctgacctgggcgcggacgccatcaagatg
ggtgtctatactggcttgatcggttttgcccttgtcgtcggatttatgatcgtgctctac
ggcggttgggggattatcgccaatctggccctcggtctcaatgtcatcctgacctttgcc
tgcctgtcgctgattggcgcgacgctgaccctaccgggtatcgcaggcattgtgctcggt
atcggccttgctgttgacgctaacgtgctgattaatgagcggattcgggaagaaacccgc
aagggacggggcgccatggcggcgctggatgccggtttccgccgggcctattccaccatt
atcgatagtaatgtgacggcgctgattgccacgctgctgctgttctggttcggctctggc
ccggttcgcggttttgccatcaccatgggtctgggcattgccatatcgatgtttacagcg
gtttcggtggtgcgagtcgtcatgctcgccattgtcaggcgctacaagctgaagcgtctc
gatatcaagcctctgcttcccctccagttgatccctgatggaacacgcattcgtttcatg
cgggcgcgcttcgttggcatcggcatttctgcgttcctttcgattgcctctcttatcctg
ttcgtcacgcccggcttgaactatggcgtcgattttcgtggtggtatccagcttgaagtg
gtgactcaggaccgcgccgatctcgccgccttccgctcaggcttggatgggcttgggctt
ggcgatgtcacgcttcaggaattcggcgatgctcgtcacctgctggttcgcgtcgagcgg
cagccgggtggtgaagaagcgcagaccgcggcggtggagcggctgagaaccgaggtaaag
gttatagatgcaacggcgtcggtagagcgtaccgaagttgttggcccgaaggtgtcggga
gaactggcgaccgcgggtatcctctcggtcgtcctcgccagcctggccatgctcgcctat
atctgggcgcgtttcgagtggccttttgcggttggcgcaattgcgacactcattctcgac
gtcaccaagacgattggctttttcgcgctcaccgggcttgatttcaacctgacggccatc
gcggcgctgctgaccctggtcggctattccgtcaacgacaaggttgtcgtctatgaccgg
atgcgggagaatatgcggctttacaagacgatgccgctgcgtgaactgatcgatctgtcg
atcaacgaaacgttggcccgcagcctgtatacatcggccactgcctttctttcgctgttg
cccatggccatctggggcggtagcgcggttgagagctttgccgtgccgatgattttcggc
attgccattgcggcctcatcgtcggtgtttattgccgcaccgatcctgctgttcttaggc
gattggcgtcgcaagcgggcagcagttccggaaaagtcagccggttccgtcgaggcttga
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