Agrobacterium vitis VAT03-9: RvVAT039_pl01820
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Entry
RvVAT039_pl01820 CDS
T08809
Name
(GenBank) ABC transporter substrate-binding protein
KO
K02055
putative spermidine/putrescine transport system substrate-binding protein
Organism
avv
Agrobacterium vitis VAT03-9
Pathway
avv02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
avv00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
RvVAT039_pl01820
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
avv02000
]
RvVAT039_pl01820
Transporters [BR:
avv02000
]
ABC transporters, prokaryotic type
Mineral and organic ion transporters
Putative spermidine/putrescine transporter
RvVAT039_pl01820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SBP_bac_8
SBP_bac_1
SBP_bac_11
Motif
Other DBs
NCBI-ProteinID:
BCH67349
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All DBs
Position
pRvVAT039a:complement(190205..191269)
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AA seq
354 aa
AA seq
DB search
MNNNRGEQMQNFNITRRHFGLLAAGAAAAATLPFAVRAAGGMAVAATFPGNWEDGYRSVL
TPLVKQAGFDLTVAPALAQDQLAKVMASPGNPPYDTLLMSPGQMAVAIENDLIQKIDPSK
LKNWSMLDPAFQGEYGPTVTVEVNGIAYNPDLVPAPKGYRDLFENPAYKGLVSWTGFASN
TGVMAYTEIARIFGNGPTDMDAVFKLFKDNPEQIKGVVASTNHQMTLFQQGEIAVFMCST
GNVARLKSMGLKADFVQPETGSPAAPVNIHLTKGAKNIDAAYAYMDAAISKAAQDKLKLP
PTEMFPTNKEVALTAGIEAYVKREQLATLVYPDWAAINKNRAEWIRQFDALVAG
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacaacagaggtgaacagatgcaaaacttcaacatcacaagacgtcatttcgga
ctgcttgccgccggtgcggctgcggccgccacgctgccttttgctgtacgcgccgctggt
ggcatggctgttgcggcgaccttccccggaaactgggaggatggctaccgctccgtgctg
acgccgctcgtcaagcaagccggtttcgacctgacggtcgctcccgccttggcgcaggac
cagcttgccaaggtgatggcaagccccggcaacccgccttacgataccctgctgatgtcg
cccggtcagatggccgtcgccatcgagaacgacctcattcagaagatcgatccgtccaag
ctcaagaactggagcatgctcgatccggcattccagggcgagtacggaccgaccgtgacg
gtcgaagtcaatggtatcgcttataacccggatctggtgccggctccgaaaggctatcgc
gacctgttcgaaaacccggcttataagggcctggtatcctggaccggtttcgcctccaac
accggcgtgatggcctataccgaaatcgccaggatttttgggaacggtccgaccgatatg
gacgccgtgttcaaactgttcaaggacaatcccgagcagatcaagggcgtcgtcgccagc
acaaaccaccagatgaccttgttccagcagggcgaaatcgctgtgtttatgtgctcgacc
ggcaatgttgcgcgcctcaagtccatgggcctcaaagccgatttcgtgcaaccggaaacc
ggctccccggcagctcccgtcaatatccatctgaccaagggcgccaagaacattgatgca
gcctatgcctatatggacgccgccatctcaaaggccgctcaggacaagctaaaactgcca
ccgaccgagatgttcccaaccaataaggaggtcgctctcacagcgggcatcgaggcctat
gtgaagcgtgaacagctggcaacgctggtctatccggactgggcggcgatcaacaagaac
cgtgcggaatggatccgccagttcgatgctctcgtcgccggttga
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