Agrobacterium vitis VAT03-9: RvVAT039_pl02430
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Entry
RvVAT039_pl02430 CDS
T08809
Symbol
lcfB
Name
(GenBank) long-chain-fatty-acid--CoA ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
avv
Agrobacterium vitis VAT03-9
Pathway
avv00061
Fatty acid biosynthesis
avv00071
Fatty acid degradation
avv01100
Metabolic pathways
avv01212
Fatty acid metabolism
avv02024
Quorum sensing
avv04146
Peroxisome
Module
avv_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
avv00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
RvVAT039_pl02430 (lcfB)
00071 Fatty acid degradation
RvVAT039_pl02430 (lcfB)
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
RvVAT039_pl02430 (lcfB)
09145 Cellular community - prokaryotes
02024 Quorum sensing
RvVAT039_pl02430 (lcfB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
avv01004
]
RvVAT039_pl02430 (lcfB)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
avv04147
]
RvVAT039_pl02430 (lcfB)
Enzymes [BR:
avv01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
RvVAT039_pl02430 (lcfB)
Lipid biosynthesis proteins [BR:
avv01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
RvVAT039_pl02430 (lcfB)
Exosome [BR:
avv04147
]
Exosomal proteins
Exosomal proteins of breast milk
RvVAT039_pl02430 (lcfB)
Exosomal proteins of breast cancer cells
RvVAT039_pl02430 (lcfB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
YycE-like_C
Motif
Other DBs
NCBI-ProteinID:
BCH67410
LinkDB
All DBs
Position
pRvVAT039a:complement(258079..259581)
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AA seq
500 aa
AA seq
DB search
MQQSRISDLAYNAAQRFGNKTALTLPGLRSFSFQDIDDLAGRMAGAFAARGLQAGDRIVL
HLPNGWQWVVAYHAIARLGAVVVPANFLLSAEEVAFILDNSEAAALIVPADRRASFQTKA
HVFTLGEAPEAEELTTLLDGEYRPPVERRPDDLFTIGYTSGTTGRPKGATMTHAGLFASL
AGTATIHVRHDGDAVLTSLPFPHVYGNIVMNATFLVGSRLITTPRFDAAEALRLISAEKA
TLFEGVPTMFYQMLAHPNIANADLTSLTRCTVGGQTMPTAKIDAVTSRFGCPLLELWGMT
EVAGPAITHSPYWSPRSGSIGLPMPGLEVRLADLEEPTREATPGRPGELLVRGAMVTKGY
WRNEAATIEAIDPDGWLATGDIARTDADGYIFVVDRKKDMIITAGYNVYPAELEQLIAMH
PAVAMVAVAGIADEEKGEIAQAFVVPHRDTALSEEALLNHCRKHLASYKIPRRVIFVEDL
PKNSTGKVLRRSLREANVPA
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgcaacaatcccgcatcagcgatttggcgtataacgcagctcaacggtttggcaataag
accgccttgacccttcccggactgcgttccttcagctttcaagacatagacgatctggca
gggcgcatggccggagcatttgcggcgcgcggtctgcaagcaggtgatcgcattgtgttg
catttgcccaacggctggcaatgggtggttgcctatcacgccattgccagactgggtgcg
gtggtcgtgcctgcgaattttctcctcagcgctgaggaagtcgcctttattctggacaat
tccgaggccgcagccctgattgttcctgctgatcgccgcgcatccttccaaaccaaagcc
catgtttttacgcttggcgaggccccggaggcggaagaactcacaacacttctcgatgga
gagtataggccgccagtcgagcgccgcccggacgatctcttcaccatcggctatacgtct
ggcacaaccgggcgtccgaaaggtgccacaatgacccatgccgggctttttgccagtctt
gcgggcacggccaccatccatgtgcgtcacgatggcgacgccgtgctgacctctctgccg
tttccgcatgtttacggcaatatcgtcatgaatgcgacgttcctcgtcgggtcgcggctg
attaccacgccgcgcttcgatgccgccgaggctttacggctgatcagcgcggaaaaagcc
acgcttttcgagggtgtgccgaccatgttctaccagatgctcgcccatccgaacattgca
aacgccgacctgacaagcctgacgcgctgcaccgttggcggccagaccatgccgactgcc
aagattgatgccgtgacaagccgctttggttgcccgcttctggaattgtggggcatgacc
gaggttgcaggccctgccatcacgcactcgccctactggagcccgcgatccggatcaatc
ggattgccgatgccgggtttggaggtgcgtcttgccgatctggaggagccaacgcgcgag
gccacgcccggcaggcccggtgaattgctggtgcgtggtgccatggtcacaaagggatat
tggcgcaacgaggctgccaccattgaggcgatagaccctgacggctggcttgcgaccggc
gacatcgcccgcaccgacgcggatggctatatcttcgtggttgatcgcaagaaggacatg
atcatcaccgccggctataacgtgtatccggcagagcttgagcaattgattgccatgcat
ccggctgttgccatggtggctgttgcgggcattgctgatgaggaaaagggtgagattgcg
caggccttcgttgtgcctcaccgcgatacggcattgagcgaggaggcgttgctcaaccac
tgccgcaaacatctggcttcctacaagattccgcgacgggtgattttcgtcgaagatctg
ccgaaaaacagcaccggaaaagttctacgccgctcgctgcgagaggccaacgtccccgcc
tga
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