Acinetobacter venetianus: HWI77_03930
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Entry
HWI77_03930 CDS
T08415
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
avz
Acinetobacter venetianus
Pathway
avz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
avz00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HWI77_03930 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
avz03021
]
HWI77_03930 (rpoD)
Transcription machinery [BR:
avz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HWI77_03930 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Cwf_Cwc_15
TMPIT
DNA_pol_phi
Motif
Other DBs
NCBI-ProteinID:
QNH51941
LinkDB
All DBs
Position
complement(820700..822586)
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AA seq
628 aa
AA seq
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MSDMNSPTSQVAALISRGKEQGYLTYAEVNDHLPDSITESEQIEDIIQMLQDVGIPVHER
APETDDAMFGESTEAADEVAEEEAAAVLASVESEPGRTTDPVRMYMREMGTVELLTREGE
ISIAKRIEEGIRDVLHSIAYWPNAVEVVLQEYNDFLTGERRLADILSGYLDPETDEEIPE
VLEEESEEIEEDEKASSKTKDVKLDDDDEEEESESDDDSEGDSGPDPEVAKVRFSELEAA
WNETKTVIAKHGRNSDEAKAALEALAAVFMMFKFTPRLFEIISEMIRGTHDQIRSNEREI
MRYAVRRGRMDRTQFRTTFPEQESNLAWLDGQIAKAPAETKAHLEKVRPDVLAFQQKIAD
IEKDLGLNVKDIKDISKRMAVGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQ
EGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKINRV
SRQLLQEMGREPTPEELGERLEMDEVKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDS
NITSPVDAATSEGLKEATREVLENLTEREAKVLKMRFGIDMPTDHTLEEVGKQFDVTRER
IRQIEAKALRKLRHPSRSEHLRSFLEND
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatatgaattcccctacttcgcaagtagcggctctgattagccgaggcaaagaa
caaggttacttaacttacgctgaggttaacgatcatctcccagactcgattacagaaagc
gaacagattgaagacatcattcagatgcttcaagacgtcggtattcctgtgcatgagcgt
gcacctgaaactgacgatgcaatgtttggcgaatctactgaagctgcggatgaggttgca
gaggaagaagctgctgctgttttagcatcggttgaaagtgagcctggtcgtaccactgac
cctgtgcgtatgtatatgcgtgaaatggggacagttgaactccttacccgtgaaggtgag
atcagcattgcaaaacgtatcgaagaaggtattcgtgacgttttacattcaatcgcttac
tggccaaacgctgttgaagtagttttacaagaatataatgactttttgactggtgagcgt
cgtcttgccgatattctatctggttatttagacccagaaactgacgaagagattcctgaa
gttttagaagaggaatctgaagaaatagaggaagatgaaaaagcttcatctaaaaccaaa
gacgttaaactagatgatgatgacgaagaagaagagtcagaaagtgatgatgattctgaa
ggcgactcaggcccagaccctgaagttgcgaaagttcgtttctctgagttagaagctgct
tggaatgaaactaaaacagttattgcaaaacatggtcgtaacagtgatgaagcaaaagct
gctcttgaagctttagctgctgtattcatgatgttcaaattcactcctcgtttatttgaa
atcatctctgaaatgattcgtggtacacatgatcaaatccgttcaaatgaacgtgaaatc
atgcgttatgcagttcgtcgtggtcgtatggatcgtactcagttccgtacaaccttccct
gaacaagaatcaaacctagcttggttagatgggcagattgcgaaagcacctgctgaaact
aaagcacatttagagaaagtacgtcctgacgtattagcgttccaacaaaagattgctgat
atcgaaaaagaccttggtctcaacgttaaagatattaaagatatctctaaacgtatggct
gttggtgaagcaaaagctcgccgcgcgaagaaagaaatggttgaggcaaacttacgtttg
gtaatttcgatcgcgaagaaatacactaaccgtggcttacagttccttgatttgattcag
gaaggtaacattggtctgatgaaagccgtagataagtttgaataccgtcgtggttataaa
ttctcgacttatgcaacatggtggattcgtcaggcgattacacgttcgatcgcggatcag
gcgcgtaccattcgtatccctgtgcatatgatcgagacaattaacaaaatcaaccgtgtg
tctcgccaacttcttcaagaaatgggccgtgaaccaacgccagaagagttaggtgaacgt
ctagaaatggacgaggttaaagttcgtaaagtacttaaaatcgcaaaagaaccgatttcg
atggaaacaccaatcggtgatgatgaagattcgcatcttggtgacttcattgaggactca
aacatcacctctccagttgatgctgcgacctctgaaggcttaaaagaagcaacccgtgaa
gtacttgaaaacttaactgaacgtgaagctaaagtattaaaaatgcgttttggtattgat
atgccaacggatcatactttagaagaagtaggtaagcagtttgatgtaacacgtgaacgt
attcgtcagattgaagcaaaagcattgcgtaagcttcgccatccttctcgttcagaacac
ttacgttcattcttagaaaatgactaa
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