Aliivibrio wodanis: AWOD_II_0231
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Entry
AWOD_II_0231 CDS
T03808
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase (DEAD/DEAH box helicase)
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
awd
Aliivibrio wodanis
Pathway
awd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
awd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AWOD_II_0231 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
awd03019
]
AWOD_II_0231 (rhlE)
Enzymes [BR:
awd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AWOD_II_0231 (rhlE)
Messenger RNA biogenesis [BR:
awd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AWOD_II_0231 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_19
HI1480
ERCC3_RAD25_C
HEM4
DsrH
Motif
Other DBs
NCBI-ProteinID:
CED56881
UniProt:
A0A090I608
LinkDB
All DBs
Position
2:273621..275159
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AA seq
512 aa
AA seq
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MGFTSLGLSAPILKAVEAQGYNTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLL
ERLSNGPKRKFNQVRALVLTPTRELAAQVHESVEKYSVNLPLTSDVVFGGVKANPQMQRL
RKGVDVLVATPGRLLDLANQNAIRFDQLEILVLDEADRMLDMGFIHDIKKILAKLPKNRQ
NLLFSATFSDEIRQLAKGLVNNPVEISVATRNTTAETVEQSVYVVDKTKKARVLTKLIKD
NDWKQVLVFSKTKHGANRLAKTLEEKGISSAAIHGNKSQGARTKALANFKSGQVRVLVAT
DIAARGLDIEQLPQVINVDLPKVPEDYVHRIGRTGRAGATGKAVSFVSEDEASELFAIER
LIKKILPRHTLEGFEPEMKVPESRLDTRPIKAKKPKKTHAPRVEHKDGQRSGENRNGHKQ
GAKPGQRRNTENSTGGAKNEGGNSSKKRTIDGGKPSGKPSVSGKPRSKGNGENRGNGSNF
GGGKPKTGGSSTSNTKPRRQGPRPARKPQPQQ
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgggttttacctctctgggcttatctgccccaattttaaaagctgtagaagcacaaggt
tacaacacgccttcaccaatccaattacaagcgattccagcggtaattgaagggaaggac
gttatggcggcagctcaaacggggacaggtaaaacagcaggctttactcttcctcttctt
gagcgcctctcaaatggccctaaacgtaagtttaaccaagtacgtgctttagtattaact
ccaacacgtgagttagctgcacaggttcatgagagtgttgaaaaatacagtgtaaacctt
cctcttacttctgatgtggtttttggtggcgttaaagctaacccacaaatgcaacgcctt
cgtaaaggggttgatgtattagtcgcaacacctggccgtttattggatcttgctaatcaa
aatgcaatcagatttgatcaattagaaattctagtgttggatgaagcagaccgtatgtta
gatatgggctttattcatgacatcaaaaaaatcttagctaaattgcctaagaatcgtcag
aatcttctgttttctgcaacgttttctgatgaaatccgtcagttagcaaaagggcttgta
aataacccggtagagatctcagtagcaacgcgtaacacaacagcagaaacagttgaacaa
tcagtttatgttgtagataagactaaaaaagcacgtgtacttactaagctaattaaagac
aatgattggaagcaggtattggttttcagcaaaactaaacatggtgcaaaccgtttagcg
aaaacacttgaagagaaaggcattagctctgcggctatccatggtaataagagccaaggt
gcacgtactaaagcattggctaacttcaagagtggtcaagttcgtgtattagtcgcgaca
gatattgctgctcgtggtttagatattgagcagcttccgcaagtgattaacgtagactta
ccaaaagtgcctgaagattatgttcaccgtattggccgtacaggtcgtgctggtgcaaca
ggtaaagcggtttcttttgtgagtgaagatgaagctagtgagttatttgcaattgagcgt
ttaattaaaaaaatattgcctcgtcatacgcttgaaggttttgaacctgaaatgaaagtg
ccagaatctagattagatactcgccctattaaagcaaagaaaccaaagaaaacacacgcg
ccacgtgtagagcataaagatggtcaacgttctggtgaaaaccgtaatggtcataagcaa
ggtgctaagccaggtcaacgtcgcaatactgaaaacagtacaggcggcgcaaagaatgaa
ggcggtaatagcagtaagaagcgtactatagacggcggaaagccttcaggtaaaccatca
gtatctggtaaaccaagatcgaaaggtaatggtgaaaatcgaggtaatggcagtaacttt
ggtggtggaaagccaaagactggtggttcatcaacaagtaacacaaagccacgtcgtcaa
ggtccacgccctgcacgtaagcctcaaccacagcaataa
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