Aliivibrio wodanis: AWOD_II_0399
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Entry
AWOD_II_0399 CDS
T03808
Symbol
deaD
Name
(GenBank) cold-shock DEAD box protein A (ATP-independent RNA helicase)
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
awd
Aliivibrio wodanis
Pathway
awd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
awd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AWOD_II_0399 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
awd03019
]
AWOD_II_0399 (deaD)
03009 Ribosome biogenesis [BR:
awd03009
]
AWOD_II_0399 (deaD)
Enzymes [BR:
awd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AWOD_II_0399 (deaD)
Messenger RNA biogenesis [BR:
awd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AWOD_II_0399 (deaD)
Ribosome biogenesis [BR:
awd03009
]
Prokaryotic type
rRNA helicases
AWOD_II_0399 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
CED57045
UniProt:
A0A090I5Z8
LinkDB
All DBs
Position
2:505039..506970
Genome browser
AA seq
643 aa
AA seq
DB search
MSETITEFRQLALDETILSALDEMGFIAPTPIQAESIPLLLAGRDALGKAQTGTGKTAAF
SLPLLNKINLKQHNPQAIIMAPTRELAIQVAAEVKNLGRNIKGLKVLEIYGGASIVDQMR
ALSRGAHIIVGTPGRVKDLLNRDRLNLSEVHTFILDEADEMLKMGFVDDVTWILEKAPDT
AQRILFSATMPPMVKTIVDRYLRDPARVDVAGSNHTVDKVAQNFWIVKGVEKDEAMSRLL
ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKRGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI
ERVTKSSMEEIELPHRDQVAEARLAVLGAELAADKEFVALEAFSDLITKLQETLEVDAAT
IAAMLLKRQQGKRPLFYKGPDPMIAAMERAKRRPERSDRGDRPERGDRRDRPERGERRQY
NNADFDTYQLEVGREQGVQVKDIVGALANELGFTKGAIGAIKLAPGHTYVQLPKKMSADV
ASKLKQLRIRQNEVKAVVVEGVDLTIDRRPRTGGGAGRDENRGGNGNSRGGYRGNREGGA
GAGAGRGGERRFDRNKGGDHRGSHRGERAPGASRAPRTPRNED
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaactattactgaattccgccaactggctttagacgaaactatcttatctgca
cttgacgaaatgggctttattgcacctacgccaattcaagctgagtctattcctcttttg
ttagctggtcgtgatgcacttggtaaagctcaaacaggtactggtaaaacagctgctttc
tctttgcctcttttaaacaaaattaaccttaagcaacataacccacaagcaatcatcatg
gctccaacgcgtgaacttgctattcaggttgctgctgaagttaagaaccttggtcgtaac
atcaagggacttaaagttttagagatctacggtggtgcttctatcgttgatcaaatgcgt
gctctaagccgcggtgctcatatcatcgttggtacacctggccgtgttaaagatttactt
aaccgtgaccgtttaaacctaagcgaagttcatacgttcatccttgatgaagctgatgaa
atgctaaaaatgggttttgttgatgatgtaacttggattcttgaaaaagcaccagataca
gctcaacgtatcctattttctgcaactatgcctccaatggttaagactattgttgaccgt
tacctacgtgatcctgctcgtgttgatgttgctggttctaaccacaccgttgacaaagta
gcacagaacttctggatcgttaaaggcgtagagaaagacgaagcaatgtctcgtcttctt
gaaactgaagaaactgacgcgtcaatcgtattcgtacgtactcgccaagatacagagcgc
ctagctgattggttatctgctcgtggctttaaagctgctgcacttcacggtgatattcct
cagtctctacgtgagcgtactgttgaccatatcaaacgtggcgttatcgatattctagtt
gcaactgatgttgttgctcgtggtcttgatgttcctcgtattacacacgtatttaactac
gacatcccattcgatgttgagtcttacatccaccgtatcggtcgtacaggtcgtgctgga
cgtaaaggtaaagcgattcttttagttcgtacaaaccaaattcgtatgcttcgtacaatt
gaacgtgtaactaaatcgtctatggaagagattgaacttccacatcgcgatcaagttgca
gaagctcgtctagcggttcttggtgctgaattagcagcagacaaagaattcgttgcacta
gaagcattctctgacttaattactaagcttcaagagactctagaagttgatgccgcgaca
atcgcagcaatgcttcttaagcgtcaacaaggtaagcgtcctttattctataaaggtcca
gatccaatgatcgcagcaatggaacgtgctaaacgtcgtccagagcgtagtgatcgtggt
gatcgtccagagcgtggtgatcgtcgtgaccgtccagaacgtggtgagcgtcgtcagtat
aacaatgctgatttcgatacataccaactagaagtaggtcgtgagcaaggcgttcaagtt
aaagatatcgtaggtgctctagctaacgaacttggttttactaaaggtgctatcggtgca
attaaacttgctcctggtcacacatatgtacagttacctaagaaaatgtctgcagacgtt
gcaagcaaacttaagcaactacgtattcgtcaaaacgaagtgaaagcggttgttgttgaa
ggtgttgacctaacaattgatcgtcgtcctcgtactggcggtggtgctggtcgtgatgaa
aatcgtggcggcaacggcaacagccgtggtggttaccgtggtaaccgtgaaggcggtgct
ggtgctggtgcaggtcgtggtggcgaacgtcgttttgaccgcaacaaaggtggtgatcac
cgtggcagtcaccgtggcgagcgtgctccaggcgcaagccgtgctccacgcacacctcgt
aacgaagactaa
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