Aliivibrio wodanis: AWOD_I_0072
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Entry
AWOD_I_0072 CDS
T03808
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
awd
Aliivibrio wodanis
Pathway
awd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
awd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AWOD_I_0072 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
awd03019
]
AWOD_I_0072 (recQ)
03400 DNA repair and recombination proteins [BR:
awd03400
]
AWOD_I_0072 (recQ)
Enzymes [BR:
awd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AWOD_I_0072 (recQ)
Messenger RNA biogenesis [BR:
awd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AWOD_I_0072 (recQ)
DNA repair and recombination proteins [BR:
awd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AWOD_I_0072 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
UBA_3
Motif
Other DBs
NCBI-ProteinID:
CED70170
UniProt:
A0A090IPE7
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All DBs
Position
1:83698..85533
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AA seq
611 aa
AA seq
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MSSIIAEQPMEQVSQSYTVLKDVFGYQEFRVGQEEVINAVLDGKDSLVIMPTGGGKSLCY
QIPALVFDGLTLVISPLISLMKDQVDQLKANGVKAECLNSTIDREEQISIWNRVNSGQVK
MLYVSPERVMMRDFMDRLASLNLCMIAVDEAHCISQWGHDFRPEYASLGQIKQRFPAVPI
MALTATADEATRKDILSRLSLPNPHEYLGSFDRPNIRYTVLEKHKPVSQIVRYLATQKNQ
CGVIYCGSRKKVEMLTEKLCNNHIRAAAYHAGLDLDERNYVQEAFQRDDIQIVVATVAFG
MGINKSNVRFVAHFDIPKNIESYYQETGRAGRDGLPAEAVMLYDPADIVWLRKLVEEKPE
GPQKLVESHKLNAMTAFAEAQTCRRQVLLNYFGEYSPKPCGNCDVCLDPPKQFDGTEAAQ
KALSCVYRVNQGFGVGYVVEVLRGLKIARIREHGHDKLSTYGIGKEHSHEYWVSIIRQLI
HKGLLAQNITRNSTLQLTEEARPILKGQEALELAVPRLDTAAKTAKSEKLNNRHYDKQLF
AKLRKLRKSIADRDDLPPYVVFSDATLMDMADITPTSYGEMLAVNGVGQKKLEKYADPFL
DLIEMHITGQG
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcattatcgcagagcagccaatggaacaggtatcacaaagctacactgtttta
aaagacgtgtttggctaccaagaatttcgtgttggacaagaagaagtcatcaatgccgtc
cttgatggtaaagacagccttgttatcatgccaaccggtggtggtaaatctctctgttat
cagatacccgcactggtttttgacgggttaaccttggttatttctcctttaatttcatta
atgaaggaccaggttgatcaacttaaagctaatggcgtaaaggcggaatgcttaaactca
accattgatcgtgaagagcaaatttcgatttggaatcgtgttaactctggtcaggtaaaa
atgctgtatgtttcacctgaacgcgtgatgatgcgtgattttatggatcgtttagcctcc
ttaaatttgtgcatgatagcggtagatgaagcgcactgtatttcacagtggggtcacgat
ttccgtccagaatacgcatcacttggacagattaaacaacgctttccagccgttccgatc
atggctctaactgcgacggcggatgaagcaacacgtaaagacattttaagtcgtctctca
ttaccaaatcctcatgaatatttgggcagttttgatcgccctaatatccgctataccgtg
ttagagaagcataaacctgtaagccaaattgtgcgttatcttgccacgcagaaaaaccag
tgtggtgtgatctattgtggtagtcgtaagaaagtagaaatgctgacggaaaagctctgc
aataaccatattcgagcagcggcttatcatgctggtttggatttggatgagcgcaactat
gtccaagaagcgtttcaacgtgatgatattcagatcgttgtcgctacggtggcgtttggt
atggggatcaataaatcaaacgttcgttttgtagcgcactttgatattcccaagaatata
gaatcttattatcaagagactggtcgagcagggcgtgatggcctacctgctgaagcggtg
atgttatacgatcctgctgatattgtatggttaagaaaactggtagaagagaagccagaa
gggccacaaaaattagttgaaagccacaagctcaatgccatgactgcctttgcagaagca
caaacgtgtcgccgccaagtcctattaaattactttggtgaatacagtcctaaaccgtgt
ggtaactgtgatgtttgtttagatcctccaaagcaatttgatggcacagaagctgcacaa
aaagccttgtcatgtgtttatcgagtaaatcaaggtttcggtgtcggttatgtcgtcgaa
gtcctacgaggcttgaaaattgcacgaattcgagaacatggccatgacaaattatcgact
tatggcattggtaaagagcacagccatgagtactgggtcagtattattcgacaactgatc
cacaaaggattgttggcgcaaaacatcactcgaaactcgacgttgcaattaactgaagaa
gctcgcccgatcttaaaagggcaagaagcattagagcttgcggttccacgacttgatacc
gcagcgaaaacagcgaagtctgaaaagttgaataatcgtcattatgataagcagttattt
gccaagttacgaaaattgcgtaaatcgatagctgaccgtgatgacctaccgccttatgtc
gtcttcagtgatgcaacattaatggatatggctgacattactccaacttcttatggtgaa
atgcttgctgttaatggagtcgggcaaaagaaactagaaaaatacgccgatccattcttg
gatttaattgaaatgcacattaccggacaaggataa
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