Aliivibrio wodanis: AWOD_I_0347
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Entry
AWOD_I_0347 CDS
T03808
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD (sigma-70)
KO
K03086
RNA polymerase primary sigma factor
Organism
awd
Aliivibrio wodanis
Pathway
awd02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
awd00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AWOD_I_0347 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
awd03021
]
AWOD_I_0347 (rpoD)
Transcription machinery [BR:
awd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AWOD_I_0347 (rpoD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMEM120A-B
Motif
Other DBs
NCBI-ProteinID:
CED70442
UniProt:
A0A090IJN5
LinkDB
All DBs
Position
1:complement(404156..405997)
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AA seq
613 aa
AA seq
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MDQNPQSQLKLLVIKGKEQGYLTYAEVNDHLPEEIVDSEQVEDIIQMINDMGIKVVETAP
DADDMSLNDDDAVTDEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEEGINEVQCSVAEFPGAISYLLEQFDRVQAEEIRLTDIISGFVDPNDDGSAAPTA
THIGSELSESDLADEDKEEAEDDDEDEEEVGIDPELALEKFTELRTSYHNMQLAFEEHGR
DNAKARSAISELTDVFREFKLIPKQFDYLVREMRGSMDRVRTQERLIMRMCVEYGKMPKK
SFIALFSGNEASDEWFNEIIASDKPYVERLKRYEEDIRRSIKKIDSIVKETGLPVVNIKD
ISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE
YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPLP
EELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDNTLELPVDSATSTSL
KFATNDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH
PSRSEVLRSFLDE
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaaatccgcagtcacagctaaaattacttgtaatcaaaggcaaggaacaaggc
tatctgacctacgcagaagttaacgatcacctaccagaagaaattgtagattctgagcag
gttgaagatattattcaaatgatcaatgacatgggcattaaagtggttgaaaccgcacca
gatgctgatgatatgtcattgaatgatgatgatgccgtaactgatgaagatgctgcagaa
gcagcagcagctgcactatcaagtgtagaaagtgaaattggccgtacaacggatcctgtt
cgcatgtacatgcgtgaaatgggtactgttgaacttcttactcgtgaaggcgaaatcgac
atcgctaaacgtattgaagaaggcatcaatgaagttcagtgttctgtcgctgaattccct
ggcgcaatttcatacttactagaacagtttgatagagttcaagctgaagagatccgtctt
actgatattatttctggttttgttgatcctaatgatgacggttcagcagcaccaacagca
acgcatatcggttctgaactgagtgaatcagatcttgctgatgaagataaagaagaagca
gaagacgatgatgaggacgaggaagaagtaggtattgacccagagcttgctttggagaaa
ttcacagaacttcgcacgtcttatcacaacatgcagcttgcttttgaagaacatgggcgt
gataacgcaaaagcacgatctgccatcagtgaattaacggatgtattccgtgagtttaaa
ctgatccctaagcagtttgactaccttgttcgtgaaatgcgcggcagcatggatcgtgtt
cgtacacaagaacgtttaattatgcgtatgtgtgttgaatatggaaaaatgcctaagaaa
tcgttcattgctctattttcgggcaatgaagcttctgacgaatggtttaatgaaattatt
gcttcagataagccatacgtagagcgcctaaagcgttacgaagaagacattcgccgttca
attaaaaaaattgacagtattgttaaagaaacaggattacctgttgtaaacatcaaagac
atcagccgtcgtatgtctatcggtgaagctaaagctcgccgtgcgaaaaaagaaatggtt
gaagcgaacttacgtcttgttatctcaattgcgaaaaaatacaccaaccgtggcctacag
ttcttggatctaattcaagaaggcaacattggcctaatgaaagcggttgataagtttgaa
taccgtcgtggttataagttctcaacttatgcaacatggtggatccgtcaagcgatcact
cgttcaattgccgaccaagcacgtacaatccgtattccagttcacatgatcgaaacgatc
aacaaactgaatcgtatttcacgtcaaatgctacaagaaatgggccgtgagccattacct
gaagaacttgctgaacgcatgcaaatgccagaagacaagatccgtaaggttctgaaaatc
gctaaagagccaatttcaatggaaacaccaattggtgatgatgaagattcacacctaggt
gatttcatcgaggataacactcttgaacttcctgttgattctgcaacttcaacaagcttg
aaatttgcaaccaacgatgttcttgctggtttaacacctcgtgaagcaaaagtacttcgt
atgcgttttggtatcgatatgaataccgaccatactcttgaagaagtaggtaagcagttt
gatgtaacgcgtgaacgtattcgtcaaatcgaagcgaaagcacttcgtaaattgcgtcac
ccaagtcgttcagaagtattacgtagcttcttagacgagtaa
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