Aliivibrio wodanis: AWOD_I_0563
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Entry
AWOD_I_0563 CDS
T03808
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V beta chain
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
awd
Aliivibrio wodanis
Pathway
awd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
awd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
AWOD_I_0563 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
awd03400
]
AWOD_I_0563 (recB)
Enzymes [BR:
awd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
AWOD_I_0563 (recB)
DNA repair and recombination proteins [BR:
awd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AWOD_I_0563 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
SLFN-g3_helicase
AAA_25
AAA_30
AAA_12
ResIII
Motif
Other DBs
NCBI-ProteinID:
CED70657
UniProt:
A0A090IK98
LinkDB
All DBs
Position
1:680310..683936
Genome browser
AA seq
1208 aa
AA seq
DB search
MTTIAAPNQLNAMTFPLHGTRLIEASAGTGKTFTIASLYLRLLLGHGDENSRHSEELTVD
RILVVTFTEAATAELRERIRAKIHDARLAFARAVHNNGYKSGDPVIDPLLESIGDHKSAA
QILLNAERSMDEASIFTIHGFCQRMLTQNAFESGAQFESEFVTDQAKLMHQVAADFWRRS
FYHLPKMVAESVYDCWSSPSTLLGDMGNSLTGVPKHLTVEPLESSLEEFCQQGIARIDEL
KKQWSEHSVDFEALISGSGVDKRSYTKKNLPNWLEQVSSWANNPTTSLQVHDKLEKFSQE
LLIEKTKKGEAPEHAVFKLIDDFLAQPLEIKQPLLSLAIHQCRKTLQQAKEQKNWLSFDD
LLSQLSEAAENKENALLLEKIREQYPVALIDEFQDTDPLQYSIFSTLYQDQPQCGLFMIG
DPKQAIYAFRGADIFTYIQARRQVADHYTLDTNWRSTADMVSSVNRIFEHGKQPFLYDDD
IPFYPVKYNPVNAEQKSWALENQTQPAMTFWLQESKDGNPVNKTSYQRVMAESTAAQIQT
ILTGAQQGSAYLQNGEKKQAIKAGDIAVLVRTGKEGKLVREALSKQGIASVYLSNRDSVF
SSPLAKDVLRLLQAAMTPTDARAVRSALASSLFAYTADQLHQFNVDEMQWEQAVNEFRAY
RKHWLQRGIMPMLHQIITQQGISERLLAENGGERQLTDLLHIGELLQQTSQTLDSDYGLL
RWLSESISEPNGDSEEQTVRLESERNLVQIVTIHKSKGLEYDLVFLPFVCSYRAIDKKGE
VSFYDEANRYSVLDLLKEDDSVEKAEKERLAEDLRLIYVALTRAVYACYIGMAPITKGIS
KKPPTGVHLSGLGYLIQQADECNVEELQACLEKLIAGNSPMVIQSPQTVTDELYQEIQDD
HSELHANKLIEPVKSNWWMTSYSGLVKQGNHHNDASLELINLDLDSAEDKDEKELDLEPE
RTIFTFPRGARAGTFLHSLFEEVEFTQPLNSEDNTQIIIKLLEKENYDVEWLEVVQAMMQ
RVLDCPLDGQDLCLSNKGPTQRLVEMEFLLPITLLNSSLVNKTIAKHDEVSARAGDLGFS
TVSGMLKGFIDLVFEHEGKYYVLDWKSNHLGDSPECYGGDALVEAMRDHRYDFQYQLYAL
ALHRFLKSRIADYDYDTHFGGAYYIFLRGVEETHEGYDANANGVFYSKPSKVLLEELEKL
VDGETVDA
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
atgacgacaatcgcagctccaaatcaattgaatgcaatgacgtttcctttacatgggaca
cgtttaattgaagcttcagccggtaccggtaaaacctttactattgccagtttatattta
cgtttattactgggccatggcgacgaaaatagccgtcatagtgaagagttaactgtagat
agaatactggtcgtaacctttactgaagcagcaacggctgagttgagagagcgtattcga
gcaaaaattcatgatgctcgtttagcctttgctcgtgctgtgcataacaatggttataag
agtggtgatccggttattgatccactgttggaatctattggtgatcataagtcagcagcg
cagatccttttgaatgctgaacgcagcatggatgaagcctcaatcttcaccattcatggc
ttttgtcagcgaatgctaacccagaatgcctttgaatctggtgcgcaatttgagagtgag
tttgttaccgaccaagccaaattaatgcatcaagtggctgcggatttttggcgtcgcagt
ttttatcatctaccaaaaatggtggctgaaagtgtttatgattgttggtcaagtccatct
actttattaggtgatatgggcaatagtcttactggtgtcccaaagcatttaaccgttgag
ccacttgagagttcattagaagaattttgccagcaaggcattgctcgtattgatgaatta
aaaaaacagtggtcagaacatagtgtagattttgaagcgctaatttcaggttcaggtgta
gataaacgcagctacactaaaaagaatttaccaaattggttagagcaagtgtcatcgtgg
gccaataacccaacaacctcattgcaagtacacgataagttagaaaagttctctcaagaa
ttattaattgaaaaaaccaaaaaaggtgaagcgccagagcatgcagtatttaaactcatt
gatgattttctggctcagccattagaaatcaaacagccgctgttatcactggctatccat
caatgccgtaaaaccttacagcaggcgaaagagcaaaaaaattggttatcgtttgatgat
ctgttaagtcagttatctgaagctgcagaaaataaagaaaacgccttattgttagaaaaa
atccgcgagcaatatccagtcgctttgatcgatgaattccaagataccgatccgctgcaa
tattcgatttttagtacactttatcaagatcagccacagtgtggtttatttatgatcggc
gatcctaaacaagcgatttatgctttccgtggtgcggatatttttacctatattcaagct
cgccgccaagttgctgatcattacaccttggatactaactggcgctcaaccgcagatatg
gtgtcgtcagtgaaccgtatttttgaacatggcaaacagccttttttgtacgatgacgat
attccattttatccggttaaatataaccctgttaatgccgagcaaaaatcatgggcgtta
gagaatcaaactcagcccgcgatgactttttggttgcaagagagtaaagatggtaatccg
gtaaataaaaccagttatcagcgtgttatggcagaatcaaccgcggcacaaattcaaact
attttgactggtgcgcagcaaggctcagcgtatttacaaaacggagagaaaaaacaagcg
atcaaagcgggtgatattgcggttctggttcgtacaggcaaagaaggtaaattagttcgt
gaagccttatcaaaacaaggtatcgccagtgtctatttatctaaccgtgatagcgtattt
tcttcgccattagctaaagatgtattgcgtttattgcaagcggccatgacgccgacagat
gcaagggcggttcgttcagcattagcatcgtcattatttgcttatactgccgatcaattg
catcagtttaatgtcgatgaaatgcagtgggagcaagcggttaatgagtttcgcgcctat
cgtaagcattggttacagcgcggtatcatgccgatgttgcatcaaatcattacccaacaa
ggtatttcagagcgtttattagctgaaaatggcggtgagcgtcaactgactgatttactg
catattggtgagttattgcaacaaaccagccaaacgttagacagtgattatggtttatta
cgttggttatctgaatctatttcagagcctaatggagactcagaagagcagactgtacgc
ttagaatcagagcgtaatctggtgcaaattgtcactatccataagtccaaaggcttggaa
tatgacttggtatttttaccgtttgtttgttcttatcgagcgatagataaaaaaggcgaa
gtcagtttctatgatgaagctaatcgttattcggtgctggatttactaaaagaagatgat
tctgtcgaaaaagcagaaaaagagcgtttagccgaagatttacgtttgatttatgtagcg
ctgactcgtgcggtttatgcctgttatatcggcatggcgccaatcactaaaggtatctcg
aaaaaaccaccaacaggtgttcatttatcgggcttagggtatctaattcaacaggcagat
gaatgcaatgttgaagagctgcaagcgtgtcttgaaaagctgattgcaggcaattcgcct
atggtgatccaatcacctcaaacggtaaccgatgagttataccaagaaattcaggatgat
catagtgagttacatgccaataaattaattgaacccgttaagagtaattggtggatgacc
agttattcaggtttggtaaaacaaggtaatcatcataatgatgcctcgttagaactcatt
aatttggatttagattcagcagaagataaagacgaaaaagaattagatttagagccagag
cgcaccatctttactttccctcgcggtgccagagcgggtacgtttttacactcgttattt
gaagaggttgaatttactcaaccactcaatagcgaagacaatacacaaatcatcattaag
ttgttagagaaagaaaactacgatgtggaatggctagaggtcgttcaagctatgatgcag
cgagtgttagattgcccgttggatggccaagatttatgtttatcaaataaaggcccaact
caacgcttggttgaaatggagtttttacttcctatcacgttattgaactcaagcttggtt
aataaaactatcgccaaacatgatgaagtttcagcgcgagcaggggatcttggtttctcg
acagttagcggcatgctaaaaggttttatcgatttagtgtttgagcatgaaggtaaatat
tacgttctcgattggaaatcaaatcatctgggagactccccagaatgttacggtggcgat
gccttagttgaggcaatgcgagatcaccgttatgattttcaatatcagctttacgccttg
gcactgcatcgattcttgaaaagtcgcattgccgattatgactacgatacgcattttggt
ggtgcgtattatattttcttgcgcggtgttgaagaaactcacgaggggtatgatgccaac
gctaatggcgtattttattcaaaaccgagcaaagtattgttagaagagttagagaaattg
gtagatggagaaacagtcgatgcttaa
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