Aliivibrio wodanis: AWOD_I_1158
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Entry
AWOD_I_1158 CDS
T03808
Symbol
sbcC
Name
(GenBank) nuclease sbcCD subunit C
KO
K03546
DNA repair protein SbcC/Rad50
Organism
awd
Aliivibrio wodanis
Brite
KEGG Orthology (KO) [BR:
awd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
awd03400
]
AWOD_I_1158 (sbcC)
DNA repair and recombination proteins [BR:
awd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AWOD_I_1158 (sbcC)
Archaeal homologous recombinant proteins
AWOD_I_1158 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
SMC_N
NTPase_1
ABC_tran
AAA_21
CPSase_L_D3
FeoC
Rad50_zn_hook
AAA_25
Motif
Other DBs
NCBI-ProteinID:
CED71242
UniProt:
A0A090ILN7
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All DBs
Position
1:1342544..1346233
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AA seq
1229 aa
AA seq
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MRILSLSFLNLNSLKGEWKIDFSTSPFAENGLFAITGPTGAGKTTILDAICLALYHKTPR
LGGISTSSNEIMTRGTAECSAEVEFEVKGKAYRAFWSQRRSRGKIDGNLQSATVELAEVD
SEKVLATQVKKKDELINSITGLDFSRFTKSMMLSQGQFAAFLNADANDRAGLLEELTGTE
IYGQISEKVHEHYTASKQKLAELKAKAEGVELLSEEDKQALIDEQVELQTNQKQQQAQLA
EWQAHVEWWIADAKNQQQWQQATENNQFALDKEKQASAQLHRLAQSEPAEKLRTPYQLWQ
EAQTRFEELVKELKTTEQSHQQKTCDKKALESHVTQLKQELDTIKGESKTLENLINDSVQ
PLDTAIAQLTQQSQEKQHQIANLTARLEDGNKKQQGLTATLSDITEKLSLLANYVEEHKA
DLQIERYLGQWKHQVSHILQQDKDTASLDGQLTSANAALETLLDAINKKEAELNQAQIMV
NNEIEATKCAELELQQWQDKGSEAQLTEQITALTTRHQYRVELTHTNNEYLRATKELKMF
ATVQKTQANDIEKLDVQRTELATQFKQQEQQVIDLTTLIEQEGELAKYRAELAKDQDCPL
CGSTHHPLLDQAQLLDLSVTIQRKKEAEQKRVEIVEQGKSVREQLDSLKIKQDHCQSQSV
QWQQTVESTQKQWSTLLETTQLTLILGDTDSINQFISECEASLSTLNEQAKQLRQAGDKV
RVQQNQLQQVQHRLDAVTAALNFDRQSHQTALQQQQDNNQKREQLQLRQTELKQQLVTEM
EQAGFNAPELTQITSWFVQKEQDLQQIQEKITQQQVQTQQQQTLQSDHAHLAEQLVELNT
QQQQSQTEMSALTTELEKQQAKRIELFGTQEIKTARFMMSEKLSISEQTYDVEQQKLQAL
VQDLAALDGKLNSLKESYLSCEKLSVDRSDVWKGALLQSPFETLELFQAALISEEDRQHL
LSLKAEIQQAIERTGALLESAQQIKEHHYQVPKAVEWQLMPKEAVEAELAQVKSQSETLV
KREGEIAQALRSDGERKTNQKALFEAIEAYQSEYDDIQYLHSLIGSQKGDKFRKFAQGLT
LENLVYLANKQLTRLHGRYELKRKASDGLELQVVDTWQGDVVRDTKTLSGGESFLVSLAL
ALALSDLVSHKTSIDSLFLDEGFGTLDSETLDMALDALDNLNASGKMIGVISHIEAMKER
ILVQIKVTKRSGLGVSELEKQYKKSVKCI
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
atgagaattttaagcctaagttttttaaatttaaactcactaaaaggtgagtggaaaatt
gatttctcaacgtcgccttttgctgaaaacggattgtttgcgattactggcccaacaggt
gcgggtaaaacgacgattttagatgcgatctgtttggcgctttatcataagacccctcga
ctgggtggtatctcaacctcaagcaatgagatcatgacgcgtggtacagcggagtgttcg
gcggaagtcgagtttgaagtaaaaggcaaagcgtatcgtgcgttttggagtcagcgtcgc
tctcgtggcaagatcgatggtaatttacaatcagccaccgttgagcttgctgaagtcgat
tctgaaaaagtattagcaacgcaagtcaaaaagaaagatgagctaatcaactcgattact
ggtcttgatttctctcgatttacaaaatccatgatgctttctcaaggtcaatttgcggcg
tttttaaatgctgatgcgaatgatcgcgccggtttattagaagagctaacgggtactgag
atttacggtcagatctctgaaaaagtgcatgagcattacaccgcatcaaagcagaaatta
gccgagcttaaagcgaaagcagaaggggttgaactgctttctgaagaagataagcaagcg
ttaatcgatgagcaagttgaactgcaaacgaatcaaaaacaacagcaagctcaactagca
gaatggcaagcacatgttgagtggtggattgcagatgcaaaaaatcaacagcagtggcag
caagctactgaaaataaccagttcgcgttagataaagaaaaacaagccagcgctcaattg
caccgcttggcacaaagtgagccagcagaaaaactacgtacgccatatcaattatggcaa
gaagcacaaactcgctttgaagagttggttaaagaattaaagacgactgagcaatctcac
caacaaaagacctgtgataaaaaagcacttgagtctcatgttacacagctaaaacaagag
cttgatactattaaaggtgagagtaaaacattagaaaacttaattaatgattcggtgcaa
ccgttagatactgcgattgctcaactgactcaacaatctcaagagaagcagcaccaaatc
gcaaaccttactgcgcgtcttgaggatggtaataaaaaacaacaaggtctaacagcaaca
ttatctgacataacagagaaactttctttattggccaattatgttgaagagcataaagct
gatctgcaaattgaacgttatttaggtcagtggaagcaccaagttagccatattctacaa
caagataaagatacagcctctttagatggtcaattgacatcagcgaatgcagcgctagag
actctgcttgatgctatcaacaaaaaagaagcagaattaaatcaagctcaaattatggtg
aataacgaaatagaagcgacgaagtgcgcagagcttgaattacaacaatggcaagataaa
gggtcagaagcacaactgactgagcagataactgcactaacgactcgtcatcaataccgt
gttgaattaactcatactaataatgagtatttacgagcgacaaaagagctgaaaatgttt
gccactgtgcagaaaacacaagcgaatgacattgaaaaattggatgtgcagcgtactgaa
ctagcgactcagtttaagcaacaagaacagcaagtcatcgatttaactaccttaatcgag
caagaaggcgagttagcaaaatatcgagcagaattagcaaaagatcaagattgtccgttg
tgtggttcaacgcatcatccactattagatcaagctcaattgcttgatttgagcgtgaca
atacaacgtaaaaaagaagccgagcaaaaacgcgtagagattgtcgagcaaggtaaatca
gtacgtgaacaattagattcgcttaaaataaaacaagatcattgccaatctcaatcagtg
cagtggcaacaaacggttgaatccacgcaaaagcaatggtctacgttattagaaacaacg
caactcactctaatcttaggtgatactgattcgattaatcagttcattagtgagtgtgaa
gcctctttatctacgcttaatgagcaagcaaagcaattacgccaagcgggtgataaggtt
cgagtgcaacaaaaccaattacaacaagttcagcatcgtcttgacgctgtcactgcggcg
ttaaattttgatcgtcaatcacaccaaacggcgcttcaacagcaacaagataacaatcaa
aaaagagaacagctgcaattgcgtcaaacggaacttaagcagcagttggtcaccgaaatg
gagcaagcaggctttaatgcaccagagttgactcaaattacctcttggtttgtacaaaaa
gagcaagatttacaacaaattcaggaaaaaatcacacagcagcaagtgcaaactcaacaa
cagcaaacgctacaaagtgatcacgctcatttagccgagcaattggttgaattgaacact
caacagcaacaatctcaaactgaaatgtcagcattaacaacagagttagagaagcaacaa
gcaaaacgtattgagttgtttggaacacaagagatcaaaacagcgcgctttatgatgagt
gagaaattgtcaatttcagagcaaacgtatgatgttgagcaacagaaattacaagcatta
gtacaagaccttgcggctttagatggtaagttgaatagtcttaaagagagttatttaagt
tgtgaaaaactatcggtagatcgttctgatgtatggaaaggcgctttattacaaagtccg
tttgaaacgcttgagttattccaagcggcattgatttcagaagaagatcgccaacaccta
ttaagcttaaaagctgaaatacaacaagcgattgagagaactggcgctttgctagagagt
gcacagcaaatcaaagaacaccattatcaagtaccaaaagcagttgaatggcaattaatg
ccaaaagaagcggttgaggctgagttagctcaagtgaaatctcaatctgaaacattagtg
aagcgagagggtgaaatagctcaagcattgcgttcagatggcgagcgtaaaactaatcaa
aaagccttgtttgaagcaatagaggcgtatcaatctgaatacgatgatattcaatatctg
cattcattaattggttcacaaaaaggggataaattccgtaaatttgcccaaggattaacg
ttagagaacttggtgtatttagccaataagcagttaactcgtttgcatggtcgctatgaa
cttaaacgcaaagccagtgatggtctagaattacaagtagtagatacgtggcagggtgat
gtagttcgtgatactaaaaccttgtctggcggtgagagttttcttgttagtttggctctg
gctttggcgctttctgatttagtcagtcacaaaacaagtattgattcactgttcttagat
gaaggatttggtacgctagacagtgaaacattagacatggcgcttgatgcgttagataac
ttaaatgcatcaggaaaaatgatcggtgtgataagccatattgaagcgatgaaagaacgt
attctagtacaaataaaagtcaccaaacgcagtggtttaggcgtgagtgaactagaaaaa
caatataaaaagtcagttaaatgtatatag
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integrated database retrieval system
