Aliivibrio wodanis: AWOD_I_1570
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Entry
AWOD_I_1570 CDS
T03808
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
awd
Aliivibrio wodanis
Pathway
awd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
awd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
AWOD_I_1570 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
awd03400
]
AWOD_I_1570 (sbcB)
Enzymes [BR:
awd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
AWOD_I_1570 (sbcB)
DNA repair and recombination proteins [BR:
awd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
AWOD_I_1570 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AWOD_I_1570 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AWOD_I_1570 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Phage_DsbA
Motif
Other DBs
NCBI-ProteinID:
CED71642
UniProt:
A0A090IMI7
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All DBs
Position
1:1781531..1782955
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AA seq
474 aa
AA seq
DB search
MPQDNAPSFFFFDYETWGTSPSLDRPCQFAGVRTDEDFNIIGEPLVIYCRPPIDYLPSPE
ACLITGITPQTAVNKGLSEPEFITQIHNELSKPNTCSLGYNNIRFDDEVSRYTLYRNFFE
PYGWSWQNGNSRWDLLDVMRAVYALRPEGIKWPKDEEGKPSFRLEKLSQANGIEHENAHD
AMADVIATIELAKVVKKAQPKMFNYLLSMRHKKKAATLIDIVEMTPLMHVSGMFGVDRGN
ISWIVPVAWHPTNNNAVITIDLALDPSVFLELDAEQLHQRMYTKRADLAPDELPVPVKLV
HLNKCPILAPAKTLTAENAENLNVDRAACLKNLKVIRDNPEIRQKLIALYSIEPNYEKST
NVDTLLYDGFFSHADKTTIDIIRQSTPEQLIDFEPNVSDPRIKPLLFRYRARNFPHTLNE
TEQLKWQSHLQDYFQTHLPEYESSFENLYLESEGNEKKTAILRAVYNYVQQLVS
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaggataacgcaccaagtttcttcttttttgattatgaaacatggggaactagc
ccatctctcgatcgcccatgccaatttgctggagttcgtaccgatgaagatttcaatatc
attggtgagccattagttatttactgtcgccctccaattgattatttaccttctcctgaa
gcctgtttaattactggcatcacgccacaaactgcggtaaataaaggcctgtctgagcct
gagttcattactcaaatccataacgaattatcaaaaccaaatacttgctcgctaggctat
aacaacattcgttttgatgatgaagtttctcgctacaccttatatcgtaacttctttgaa
ccgtatggctggagctggcaaaacggcaactcgcgttgggatctacttgatgtaatgcgt
gctgtgtatgctctgcgtcctgaaggcattaaatggccaaaagacgaagaaggcaaacca
agctttagattagaaaaactctcgcaagcaaatggcattgaacatgaaaatgcccacgat
gcgatggccgatgttattgccaccatcgagttagctaaagtcgttaaaaaagcacaacct
aaaatgtttaactacctgctttctatgcgtcataaaaagaaagcggcaacgttaatcgat
attgttgaaatgacaccgttaatgcacgtgtctggtatgtttggcgtagatagaggcaat
attagttggattgtgcctgttgcttggcatcctaccaataacaacgccgtcattacgatt
gatttagcgttagacccaagtgtgttcctagaattagatgcagagcaattacatcaacgc
atgtataccaaacgtgctgatctagcccctgacgaattgcctgttcctgtaaaattagta
catttaaacaagtgccctattcttgcgcctgctaaaacattgacggctgagaatgctgaa
aatctaaatgtggacagagccgcctgtttaaaaaatcttaaagtgatccgtgataaccct
gagatcagacaaaagctaattgcgctttacagcattgagcctaattatgagaaatcaacc
aatgtagatacccttctatatgatggtttcttctctcatgctgataaaacgacgattgat
attatccgtcagtcaacgcctgagcagcttatcgattttgaaccaaatgtcagtgaccca
cgcattaaacctctattattccgctatcgtgcgcgcaatttcccgcatacgcttaatgag
acagagcaactgaaatggcaatcacatttacaagattacttccaaactcatttacctgaa
tacgaatcaagctttgagaatttatatcttgaatctgaaggcaatgagaaaaagactgcg
atccttcgcgccgtttataattacgtacaacagttagtatcatga
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