Aliivibrio wodanis: AWOD_I_2065
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Entry
AWOD_I_2065 CDS
T03808
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha chain
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
awd
Aliivibrio wodanis
Pathway
awd03030
DNA replication
awd03430
Mismatch repair
awd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
awd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AWOD_I_2065 (dnaE)
03430 Mismatch repair
AWOD_I_2065 (dnaE)
03440 Homologous recombination
AWOD_I_2065 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
awd03032
]
AWOD_I_2065 (dnaE)
03400 DNA repair and recombination proteins [BR:
awd03400
]
AWOD_I_2065 (dnaE)
Enzymes [BR:
awd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AWOD_I_2065 (dnaE)
DNA replication proteins [BR:
awd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AWOD_I_2065 (dnaE)
DNA repair and recombination proteins [BR:
awd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AWOD_I_2065 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
CED72130
UniProt:
A0A090IUR2
LinkDB
All DBs
Position
1:complement(2363117..2366596)
Genome browser
AA seq
1159 aa
AA seq
DB search
MSDPKFVHLRVHSDFSLVDGLSKVPPLVKKVAEMNMPAMALTDFTNLCGLVKYYFAAHGA
GVKPIIGADFTVQSKELGKELFNLTVLAKNNEGYKNLTLLISKAYLRGHVQHTPVMDKEW
LIEHKEGLILLSGGKTGDVGKALLKGNKELASECVEFYQTYFPEHYYLELTRTGRADEES
YLHLAVELAEEEGLPVVATNDVRFIKAEDFDAHEIRVAIHDGFTLVDPRRPKLYSEQQYL
RSEDEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPNFPTEGMTIEDFLVKKSQEGL
ERRLAFLFPDEKIRLERRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNLIPVGP
GRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMDKRDQVIEHVAE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRLSKLIPPDPGMTLAKAFEAEPQ
LPELYNGDEEVKALIDMCRILEGCTRNAGKHAGGVVISPTTITDFAPLYCDADGNFPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRRAKEGKSPVRIESIPLDDQASFKVL
QNSETTAVFQLESRGMKDLIKRLQPDSFEDIIALVALFRPGPLQSGMVDNFIDRKHGREE
VSYPDVNWQHESLKETLEPTYGIILYQEQVMQIAQILAGYTLGGADMLRRAMGKKKPEEM
AKQRGTFKEGAIANGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA
EFMAAVMTADMDNTDKIIGLVDECFRMKLKVLPPDVNAGLYRFNVDESGAIVYGIGAIKG
VGEGPIENIIEARNKGGHFRDLFDFCSRIDTKKANKRVVEKLIRSGALDRLGPHRAALMA
SLDDAMKAAGQHHQAESFGQSDMFGVLTQAPEEVEQAYIHVPRWPEKVWLEGERETLGLY
LTGHPVNAYIKELSRYTTWRLNDAHVTRRDQTVTVAGLVIAARVMTTKRGSRIGLMTLDD
RSGRMEVMLFSDALDRYADLLETDKIVLVSGQVSFDDFNGGLKMSAREVMSLGDAREKYA
RGLSVSVTDAQINNNFFERFSQILEPNRAGTVPVNVYYQRADARVKLVLGTEWRVTPTDQ
LMDDLKSLLGEQQVELEFN
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaccctaaattcgtacacctaagagtacacagtgacttttctttagtggatgga
ctttctaaagttccacccttagtaaagaaagtggctgaaatgaacatgccggcgatggca
ttgactgatttcactaacttatgtggattggtaaaatattattttgccgcacatggggct
ggtgttaaacccattattggtgctgactttaccgttcaatcaaaagaacttggtaaggag
ttatttaatttaaccgtattggcgaaaaataatgaagggtataaaaatcttaccttatta
atatctaaagcttatttacgaggtcatgttcaacatacacccgtgatggataaagagtgg
ttgatagaacataaagaaggcttaattcttctttctggtggtaaaaccggtgatgttggt
aaagctttacttaaaggtaataaagagcttgcaagtgagtgtgttgagttctaccaaact
tatttcccggagcattattatcttgaattaactcgaacgggtcgtgccgatgaagaaagc
tatcttcatttagcggtagagttagcggaagaagaaggattgcccgttgttgcaaccaat
gatgttcgttttattaaagcggaagattttgatgctcatgagatccgagttgcgattcat
gatggctttactttagtcgatcctagaagaccaaaactttatagtgagcaacagtattta
cgctcagaagatgaaatgtgcgaactgttttctgatataccagaagcgctagaaaacagt
gttgaaattgcaaagcgttgtaatgtgacggtacgtcttggtgaatattttcttcccaat
tttccaacagaaggcatgacaattgaagacttcttagttaagaagtctcaagaaggttta
gaaagacgtttagcctttttgtttcctgatgaaaaaatacgcttagagcgccgtcctgaa
tatgatgagcgtttacagattgaattagacgtaattaaccaaatgggcttcccaggttac
tttttgatcgtaatggagttcattcagtggtctaaagataacctgatccctgtaggacca
ggacgagggtcaggtgcagggtcattagtagcttatgctttagatattaccgatcttgac
cctcttgaatatgacctcctgtttgagcgattcttgaatccagaacgtgtatccatgccc
gatttcgatatcgatttctgtatggataagcgtgatcaggttattgagcatgttgctgaa
atgtatggtcgtgatgcggtatctcaaatcatcacctttggtaccatggcggcaaaagcg
gtaattcgtgatgtaggtcgtgtgcttggtcatccttatgggtttgttgaccgtctctct
aagttgatcccacccgatccaggaatgacgcttgctaaagcatttgaagctgaacctcaa
cttccagagctatataacggagatgaagaagttaaggccttgatcgacatgtgtcgtatc
ttagaaggctgtacccgaaatgctggtaaacatgcgggtggtgttgttatttcaccaacc
acgattactgattttgctccgttgtattgtgatgcggatggtaatttccccgtaacacaa
tttgataaaaatgatgttgaaactgctggcttggttaagtttgacttcttgggtctgcga
accttaaccatcattgattgggcgttagggttagtgaatcctcgacgagcgaaagaggga
aaatctcctgttcgcatagaatcgatacctttggatgatcaagcctcatttaaagtgtta
caaaattcagaaacgactgcggtattccagttagaatctcgtggtatgaaagatcttatc
aagcgattacagccagacagctttgaagatatcatcgcattggtagctctattccgccca
ggtcctttgcaatcaggcatggtagataactttattgaccgaaagcacggtcgtgaagag
gtgtcttatcctgatgttaattggcagcatgagtcattaaaagagactctagaaccaact
tacggcattattttgtatcaagaacaagtaatgcaaattgcacagatcttagcgggttat
acgctaggtggagcggatatgcttcgtcgtgcaatgggtaagaaaaaacccgaagagatg
gcaaagcagcgtggtacgtttaaagaaggtgctattgctaatggggtagatggcgagttg
tcgatgaaaatcttcgacttggtagaaaaatttgcggggtacggttttaacaaatctcac
tcagcggcttatgctctggtttcttatcaaacattatggttaaaaacgcattatcctgct
gagtttatggcagcggtaatgacggcagacatggataacactgataagatcattggtctt
gttgatgaatgtttccgtatgaaactaaaagtgttaccaccagatgtaaatgcgggtctt
tatcgttttaatgttgatgagagtggcgcgattgtttatggcatcggtgcaatcaaaggg
gtgggagaaggccctattgaaaatattattgaggcgcgaaataaaggcggtcatttccgt
gacttatttgatttttgttctcgaattgatacaaaaaaagccaataaacgtgtcgttgaa
aaattgatccgctcaggtgcgttagatcgccttggtccacaccgtgcggcattaatggcg
tcattagatgatgcaatgaaagcagcaggtcaacatcatcaagctgaatcgtttggtcaa
tcagatatgtttggcgtattaacccaagcgcctgaagaagttgagcaagcgtatattcat
gttcctagatggcctgaaaaagtctggcttgaaggggaaagggagacattaggcctctat
ttaacgggtcatccagttaatgcgtatattaaagaattatctcgatatacgacgtggcgt
ttgaatgacgctcacgttactaggcgtgatcaaaccgtaacagttgcaggtttagttatt
gctgctagagtaatgaccacaaaacgaggcagccgtatcggtttaatgacattggatgat
agatcgggccgaatggaggtcatgttattctcagatgcgcttgatcgatacgcagatttg
ctagaaactgacaaaatagtgcttgtttctggacaggtcagctttgatgatttcaacggg
gggcttaaaatgtctgcccgtgaagtgatgtcattaggagatgcacgagaaaaatacgct
cgtggattatccgtttctgttacagatgcgcaaattaacaacaatttttttgagcgcttt
agtcaaatactagagccaaatcgggcagggactgtaccggtaaatgtatattatcagcga
gcagatgctcgtgttaagttggtcttagggacagagtggcgagttacgccaacagatcaa
ctaatggatgatttgaaatcgttgcttggcgaacagcaagtcgagcttgaatttaactag
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