Aliivibrio wodanis: AWOD_I_2231
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Entry
AWOD_I_2231 CDS
T03808
Symbol
vpsR
Name
(GenBank) sigma-54 dependent transcriptional regulator VpsR
KO
K20919
sigma-54 dependent transcriptional regulator, positive regulator of biofilm formation
Organism
awd
Aliivibrio wodanis
Brite
KEGG Orthology (KO) [BR:
awd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
awd03000
]
AWOD_I_2231 (vpsR)
Transcription factors [BR:
awd03000
]
Prokaryotic type
Helix-turn-helix
Other families
AWOD_I_2231 (vpsR)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
VpsR
Sigma54_activat
Sigma54_activ_2
HTH_8
AAA_16
HTH_50
HTH_29
BET
HTH_22
HTH_7
AAA_2
HTH_17
AAA
HTH_IclR
HTH_30
Zeta_toxin
DUF134
AAA_5
HTH_Tnp_1_2
TrmB
Motif
Other DBs
NCBI-ProteinID:
CED72291
UniProt:
A0A090IN12
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Position
1:complement(2554727..2556064)
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AA seq
445 aa
AA seq
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MGTQFRMDSVPGSLVVVGGSYEPWLAVLEQVGWRCHRCYDLRAAQVLFDEIGPCIGIVDL
SQDDFSLNGIATLVNNNKQVRWMAFIRESQLSSDTICQFIVNFCVDFFTAPIPDAQLLST
IGHQLGMLKLERKVWPNMGNKSDLGILGEAPAVKRLRDQVRRVAPTDVSILISGESGVGK
GDVAKAVHESSGRNKGPFISLNCGALSESKIEQELFGFEALSFEDTKLFKANGGTLFLND
INDLPLTQQQKLLHFLQEGCIETAQGVIELDVRVIVASHIDLEKQIEEGYFKEELYYRLN
VLRIHVPSLRERGADISILAEHFLQKYAREYNTQARTFSEEAMQTMLYYQWPGNIRELVN
QVKRAVLLADSMTVDLEHLDLPQRTEIKRSLRVIREDSERDALLTVLESHDGQVSSAAKE
LGVSRATMYRLLNKHNLISEPRSYS
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgggtactcagtttcgtatggactctgttcctggttcattagttgtggtagggggaagt
tatgaaccttggttagcagtattagaacaagttggttggcgttgtcatcgttgttatgac
ctccgagctgcgcaagtattatttgatgaaattggcccatgcattggcattgtagattta
agccaagatgatttcagccttaatggtatcgcgacgttagtaaataataataaacaagtt
cgttggatggcctttattcgagaatctcaattaagttcagataccatctgccagtttatt
gtgaatttctgtgttgattttttcacagctccaattcctgatgctcaattgcttagcaca
atcggccatcaattaggcatgttgaagctagagcgtaaagtatggcctaatatgggaaat
aaatctgacttaggaattttaggtgaagctccagcagtaaagcgcttgcgtgatcaggtt
cgtcgagtggcaccaacggacgtatctattttaatttcaggagaaagcggtgtaggtaaa
ggtgatgttgccaaagcggttcatgagtcatcaggaagaaataaaggtccttttatttct
ttaaattgtggtgcgttatctgaaagtaaaatagagcaagagctttttggttttgaggct
ttaagctttgaagatactaaattatttaaagccaatggtgggacgttattcttaaatgat
attaatgatttacctttaactcaacagcaaaaattattacattttttacaagaaggctgc
atagaaacagcgcaaggagtaatagaacttgatgtaagagttattgtggcaagtcatatt
gatttagagaagcagatagaagagggttattttaaagaagagctttattatcgtttaaat
gtccttcgtatacatgtcccctctttaagagagagaggcgcagatatttcaattcttgct
gaacattttttacaaaaatacgcacgagaatataacacccaagctcgaactttttcggaa
gaagcaatgcaaactatgctttattatcaatggcctggtaatattcgtgagttggtaaat
caagtaaaaagagcggtattactagcagatagtatgacggtagatcttgagcatttagat
ttgcctcagcgcaccgaaataaaacgcagtttacgtgtaattcgtgaagactctgaacga
gacgcactacttacggtattagagtcccacgacggacaagtatcttcagctgctaaagaa
ctcggtgtttctcgggcgacaatgtatcggttgttgaataagcataatctaatttcagaa
ccaagaagctatagttag
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