Aliivibrio wodanis: AWOD_I_2408
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Entry
AWOD_I_2408 CDS
T03808
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA (ATP-dependent helicase hepA)
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
awd
Aliivibrio wodanis
Brite
KEGG Orthology (KO) [BR:
awd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
awd03021
]
AWOD_I_2408 (rapA)
Transcription machinery [BR:
awd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
AWOD_I_2408 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
AAA_34
Flavi_DEAD
DUF7090
Cas3-like_C_2
DUF4191
MCPVI
Motif
Other DBs
NCBI-ProteinID:
CED72463
UniProt:
A0A090IT25
LinkDB
All DBs
Position
1:complement(2754843..2757752)
Genome browser
AA seq
969 aa
AA seq
DB search
MSFALGQRWISDTESDLGLGTVVAVDDRTISVLFAASEENRLYAKHDAPVTRVMFNKGDT
IESHEGWSLEVEEVIEDGGLLTYIGTRVDTDEVNVVLRETLLSHQIRFNKPQDKLFAGQI
DRMDRFALRFRALKNQYEQHKNPMRGLCGMRAGLIPHQLFIAQEVGRRYAPRVLLADEVG
LGKTIEAGMIIHQQVLSGRAERVLIVVPETLQHQWLVEMMRRFNLHFSIFDEERCVEAYA
DSENPFDTAQLVLCSLDFIRKSKRRFEQVVEADWDLLVVDEAHHLEWNQTKPSREYQVIE
AIAEDTAGVLLLTATPEQLGHESHFARLRLLDPDRFYDYDAFVEEERQYQPVADAVTALM
SGDKLSSEAKNRIADLLSEQDAEPLFRIIESSTSEEEQAQARQELVDNLMDRHGTGRVLF
RNTRAAIKGFPLRNLNLMPMPLPSQYATSMRVATMMGGRMSDEARAMKMLYPEEIFQEFE
GDSATWWQFDPRVNWLLELLKENRNEKVLIIASRASTALQLEQALREREGIRGTVFHEGM
SIIERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLD
RIGQKRDIDIHVPYLQGTSQELLARWFDEGLNAFGETCPTGRAVYEKFADTIIAILATGK
SDGLEPLIEESAALNKELKAQLEQGRDRLLEVHSNGGDKAKALAEKIAATDGDTNLVNFA
LNLFDTIGLNQDDKGENAIVVTPAENMLVSSYPGLPYEGCTITFDRETALSREDMNLISW
EHPMIQGGIDLVLTEGVGATAVSLLKNKALPAGTLLLELVYVVDAQAPKQSGIGRFLPKT
PIRLMMDGKGNDLSAQVEFESFNRQLSPVNRHMASKLVNSVQKEIHALIDTAEVSIEDRI
EAVRVDANAEMKAALNAELERLQALKAVNPNIRDEELTQIETQMSELSGYIGKAQVQLDS
LRLIVVSHN
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgctttgggccaacgttggatcagtgatacagaaagtgatttgggtttagga
acagttgttgctgttgatgatagaaccatatccgtactttttgccgcatcagaagagaac
cgtttatacgcaaaacacgatgcacccgttacccgagtgatgttcaataagggagataca
attgaaagccatgaaggctggtcacttgaagtagaagaagttattgaagatggtggacta
ttaacttacatcggtacgcgagtagatacagatgaagtgaatgttgttcttcgcgaaacg
ttactaagccatcaaattcgctttaataagcctcaagataaattatttgcaggtcaaatt
gatcgtatggatcgctttgcattgcgttttcgtgctctcaaaaaccagtatgagcaacac
aaaaatccaatgcgcggtttgtgtggtatgcgtgcaggtttgatcccacatcaattattt
atcgctcaagaagttggtcgtcgttacgcaccgcgtgttttactggctgatgaagttggt
ttaggtaagacaattgaagccggtatgatcattcaccagcaagtgctgtctggccgtgct
gaacgtgtgcttattgtggttcctgaaaccctgcaacaccaatggttagttgaaatgatg
cgtcgtttcaatctgcatttctctatctttgatgaagagcgttgtgttgaagcttatgcg
gattcagaaaacccatttgatacggcacagcttgttttatgttcattagattttattcgt
aagagtaagcgtcgttttgagcaagtggttgaagcggattgggatcttcttgttgtcgat
gaagcgcatcaccttgagtggaatcaaacaaaaccaagtcgtgaatatcaagtaattgaa
gcgattgcagaagatacagctggtgttttactgcttactgcgacacctgagcagctaggc
cacgaaagccactttgctcgtctgcgtttgttagatccagatcgtttctatgattacgat
gcatttgttgaagaagagcgtcaataccaaccggttgctgatgcagtcactgcactaatg
agtggggataagctgtcgagtgaggcgaaaaatcgtattgcagatctgctttctgagcaa
gatgcagagcctctatttagaattattgaatcttctacatcagaagaagagcaagcacag
gcacgtcaagagttagttgataacttgatggaccgccatggtactggtcgtgtgttattc
cgtaatacacgtgcagcgattaaagggtttccattacgtaacctgaacttaatgcctatg
cctctaccatcacagtatgcaacgtcaatgcgtgtagcgactatgatgggcggtcgtatg
agcgatgaagctcgtgcaatgaaaatgctttatcctgaagagatcttccaagaatttgaa
ggcgatagtgctacgtggtggcagtttgatccacgagttaactggttacttgaattattg
aaagaaaaccgtaatgagaaagtattaattatcgcttctcgcgcttcaaccgcactgcaa
ttagaacaagcgttacgtgagcgtgaaggcattcgtgggacggttttccatgaaggtatg
tctatcattgaacgtgataaagcagcggcttacttcgcacaagaagaaggtggcgcacaa
gtacttatctgttctgaaattggctctgaaggtcgtaacttccagtttgctaaccaatta
gtgatgtttgatttgcctttcaatcccgacttacttgagcaacgtattggtcgtttggac
cgtattggtcaaaagcgtgatatcgatattcatgtgccgtacttgcaaggtacctctcaa
gagctattagcgcgttggtttgatgagggtttaaatgcctttggtgaaacctgtccaaca
ggtcgtgctgtgtatgaaaaattcgcagatacgattattgccattttggcgacgggtaaa
tcagatggattagaacctctgattgaagagtctgcagcactaaataaagaattaaaagcg
caattagagcaaggtagagatcgcttattagaagttcactctaatggtggtgataaagca
aaagcacttgctgagaagattgccgcaacggatggtgatacaaacttagttaattttgca
ttaaacctatttgatactattggcttaaatcaggatgacaaaggcgaaaatgccattgtt
gttactccagcagaaaatatgttggtatctagctatccaggtctgccttatgaaggttgt
acgattacctttgatcgcgaaacggcactctctcgtgaagacatgaatttgatcagctgg
gaacacccaatgatccaaggtggtattgatttagttttaaccgaaggcgtgggtgctaca
gcggtttctttattgaaaaataaagcgttgccggcagggacgttattacttgaattggtt
tatgtagtggatgcacaagcgcctaagcaaagtggtatcggtcgcttcttacctaaaacg
ccaattcgtttaatgatggatggtaaaggtaatgatctttcagctcaagttgagtttgaa
agctttaaccgtcagttaagccctgtaaaccgtcacatggcaagcaagcttgtgaactct
gttcaaaaagagatccatgcgctaattgatacggctgaagtaagcattgaagatcgtatt
gaagcggttcgagtggatgcaaacgcagagatgaaagcagcattaaatgcagagctagag
cgtttacaagcattgaaagcggtaaacccaaatatccgtgatgaagagttaactcagatt
gaaacccaaatgagtgagctttcaggatacataggtaaagcgcaagttcagcttgattca
ctgcgtttgatcgttgtgagccataactaa
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