Aliivibrio wodanis: AWOD_I_2500
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Entry
AWOD_I_2500 CDS
T03808
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
awd
Aliivibrio wodanis
Pathway
awd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
awd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AWOD_I_2500 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
awd03021
]
AWOD_I_2500 (rpoC)
03400 DNA repair and recombination proteins [BR:
awd03400
]
AWOD_I_2500 (rpoC)
Enzymes [BR:
awd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AWOD_I_2500 (rpoC)
Transcription machinery [BR:
awd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AWOD_I_2500 (rpoC)
DNA repair and recombination proteins [BR:
awd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AWOD_I_2500 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Tipalpha
Motif
Other DBs
NCBI-ProteinID:
CED72552
UniProt:
A0A090IPX0
LinkDB
All DBs
Position
1:complement(2838119..2842324)
Genome browser
AA seq
1401 aa
AA seq
DB search
MKDLLKFLKAQHKTEEFDAIKIGLASPDQIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLMDIPLRDIERVLYFESYVVTEPGMTDLERSQLLSEEDYLDKLEEFGDEFTAKM
GAEAIKDLLGSMDMQAEIEDMREELETTNSETKRKKLTKRLKLVEAFVQSGNNPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYSKLEGRGLATTIKAAKKMVEREEAIVWDILDDVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTRDKINAKGEGMYLEGFAEAEKAYRTG
CAELHARVKVRITEVLRDENGIETRETKLVDTTVGRAMLWQIVPEGLPYSIINQKLGKKQ
ISNLLNEAYRSLGLKDTVVFADQIMYTGFAYAALSGASVGIDDMVIPDAKYTKVADAEEE
VKQIQEQYQSGLVTAGERYNKVIDIWAATNEQVAKEMMDNLSSETVLNRDGEEEQQESFN
SVYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVNQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVHLDDCGTLEGVTMIPLIEGGDVKEPLHERVL
GRVVAEDVLKPGTDEILLPRNTLLDEKQCQIVEENSVDQIKVRSVVSCEADFGCCANCYG
RDLARGHMVNQGESVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAADNSIQVKTTGSIKL
HNAKHVTNGEGNLVITSRASEMTVIDEHGRTKESYKLSYGTILSKKDGDAVVQGDKIAAW
DPHTMPIITEVQGQVQFVDMIDGVTITTQTDELTGLSSIVILDAAERASAGKDMRPTVKL
VDANGRDIMIPGTEMPAQYFLPGKAIVNLADGGNVGIGETLARIPQASSGTKDITGGLPR
VADLFEARKPKEPAILAEHAGIVAFGKETKGKVRLLITRDDNGEVYEEMIHKHRQLNIFD
GDKVERGDVISDGPETPHDILRLRGIHAVTEYITNEVQEVYRLQGVKINDKHIETIVRQM
LRKCTITHSGDSTFLEGEQLEFANVTIANRLLEAEGKQPARFERDLLGITKASLATESFI
SAASFQETTRVLTEAAVSGKRDELRGLKENVIVGRLIPAGTGFAYHQERQKQKAMEQEAP
SAEQATDNLAALLNAGFSSEE
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcacaacacaagaccgaagaatttgatgcaatc
aaaatcggtcttgcttcacctgaccaaattcgttcatggtcttttggtgaagttaaaaag
ccagaaacaatcaactatcgtacctttaagccagaacgtgacggtcttttctgtgcacgt
atctttggcccagttaaagactacgagtgcttatgtggtaaatataagcgcctgaagcac
cgtggtgttatctgtgaaaaatgtggcgtagaagtaacgcaaactaaagttcgtcgtgac
cgtatgggccatattgaacttgcgtctcctgttgcacatatctggttcctgaagtcactt
ccatctcgtattggtttgttaatggacattcctctacgtgatatcgaacgtgtactttat
tttgaatcatatgtggttacagagccgggtatgactgacttagagcgcagccaacttctt
tcagaagaagactaccttgataagctagaagagttcggtgacgaatttacagctaagatg
ggtgcggaagcgattaaagacttgcttggctctatggacatgcaagctgaaatcgaagac
atgcgtgaagagttagaaactactaactcagaaacaaaacgtaagaaactgactaagcgt
ttgaaacttgtagaagcattcgttcaatctggtaataatccagaatggatgatcttaact
gttctacctgtacttccgccagatcttcgtcctctagtaccactagatggcggccgtttt
gctacgtctgatctaaatgacttataccgtcgtgtgattaaccgtaataaccgtttgaag
cgtcttttagacctagctgcaccagacatcattgtacgtaacgaaaaacgtatgttgcaa
gagtctgtggatgcgctgcttgataacggtcgtcgtggtcgtgcgattacaggttctaac
aagcgtcctcttaaatctcttgctgatatgatcaagggtaaacaaggtcgtttccgtcag
aacttgcttggtaaacgtgtagactactctggtcgttctgtaattacagtaggtccatac
cttcgtctacatcagtgtggtcttcctaagaagatggcacttgaactatttaaaccattt
atctacagcaaattagaaggtcgcggtcttgctacgacaatcaaagctgctaagaaaatg
gtagagcgcgaagaagcgatcgtttgggatatcctagatgacgtaattcgtgaacaccca
gtactgcttaaccgtgcaccaacacttcaccgtcttggtattcaagcgtttgaaccagta
ctaatcgaaggtaaagcgattcagcttcacccacttgtgtgtgcggcatataacgccgac
ttcgatggtgaccagatggcggtacacgtacctctaactctggaagctcaattagaagca
cgtacactaatgatgtcgacgaataacattctgtcgccagcatcaggcgacccaatcatc
gttccttctcaggatgttgtattaggtctgtactacatgacacgtgacaaaattaacgcg
aaaggcgaaggcatgtaccttgaaggttttgctgaagctgagaaagcataccgtacaggt
tgtgcagagctacatgctcgcgttaaagttcgaatcacagaagtacttcgtgatgaaaac
ggtattgaaactcgtgaaactaaactggttgatacgactgttggtcgtgcaatgctatgg
cagatcgttcctgaaggtctaccttacagcatcattaaccagaagttaggtaagaagcaa
atctctaacctactaaacgaagcatatcgttctcttggtctaaaagacacagtagtgttt
gctgaccaaatcatgtacacaggtttcgcatacgcagcattgtctggtgcgtctgttggt
atcgatgacatggttatccctgatgctaagtacactaaagttgctgatgcagaagaagaa
gttaagcaaattcaagaacagtaccaatctggtcttgtaactgcaggcgaacgttacaac
aaagttatcgatatctgggcagcaacgaatgaacaagttgctaaagagatgatggataac
ttgtcttcagaaaccgtgcttaaccgcgatggtgaagaagagcagcaagaatcgtttaac
agtgtttacatgatggccgattcaggtgctcgtggttctgcagctcagattcgtcagctt
gcaggtatgcgtggtctgatggcgaaaccagatggttcaatcatcgaaacaccgatcacg
gcgaacttccgtgaaggtctaaacgtaaaccaatacttcatctcaacgcatggtgcgcgt
aaaggtcttgccgatacagcacttaaaacagcgaactcaggttacctgactcgtcgttta
gttgatgttgctcaagatgttgtagttcatttagatgactgtggaacactggaaggtgta
accatgatccctctaattgaaggtggtgatgttaaagaacctctacacgagcgtgttcta
ggtcgtgtggttgctgaagatgtattgaaacctggtacagatgagattcttcttccacgt
aacacgcttcttgatgagaagcagtgtcaaatcgttgaagaaaattcagttgaccagatt
aaagtgcgttcagtagtaagctgtgaagctgacttcggttgttgtgctaactgttacggt
cgtgacttggctcgtggtcacatggtaaaccaaggtgagtcagtaggtgttatcgctgct
caatcaatcggtgaacctggtacacagctaacgatgcgtacgttccacatcggtggtgcg
gcatctacggcagcagcagacaatagcattcaagttaagacgactggttcgatcaagctt
cataatgctaagcacgtaacaaacggtgaaggtaacttagttatcacatctcgtgcttct
gaaatgacagttattgatgagcatggccgtacaaaagagagctataagctatcttacggt
actattctttctaagaaagatggtgatgcagtggttcaaggcgataagatcgctgcttgg
gacccgcatacaatgccaatcatcactgaagtacaaggtcaagttcaattcgtggacatg
attgatggtgtgacaattacaactcaaactgatgagttaactggtctatcttcaattgtt
atccttgatgcggctgagcgtgcttctgctggtaaagacatgcgtccaacagtgaaactt
gttgatgcgaatggtcgtgacatcatgatccctggcactgaaatgccagcacaatacttc
ctacctggtaaggcgattgttaaccttgcagatggcggtaacgtaggtatcggtgaaaca
ctagctcgtattcctcaagcttcaagtggtactaaagatattaccggtggtcttccacgc
gttgcggacttatttgaagctcgtaaacctaaagagccagcaattcttgctgagcacgca
ggtattgttgcgtttggtaaagaaactaaaggtaaagtacgcttattgatcactcgtgac
gataacggcgaagtttatgaagaaatgattcataagcaccgtcaacttaacatctttgat
ggtgataaagttgaacgtggtgacgttatctctgatggtccagaaactccacatgatatc
ctacgtttacgtggtatccatgcagttactgaatacatcactaacgaagttcaagaagtt
taccgcttacaaggcgttaagattaacgataagcacattgaaactatcgttcgtcaaatg
ctacgtaagtgtactatcacacattctggtgattctaccttccttgaaggtgaacagcta
gaattcgctaacgtaacgattgcaaaccgtctgcttgaagcagaaggtaagcaaccagct
cgtttcgaacgtgatctactaggtattactaaagcgtctcttgctactgagtcgttcatc
tctgctgcatcgttccaagaaacgacgcgcgtacttactgaagcagctgtttctggtaag
cgtgatgaactacgtggtctgaaagaaaacgtaatcgttggtcgtctaattccagcgggt
acaggtttcgcataccaccaagaacgtcaaaagcaaaaagcaatggaacaagaagctcct
tctgctgaacaagcgactgataacttagccgctctattaaatgcaggattctcttctgaa
gagtaa
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integrated database retrieval system
