Actinomyces weissii: JG540_03890
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Entry
JG540_03890 CDS
T07198
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
awe
Actinomyces weissii
Pathway
awe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
awe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JG540_03890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
awe03019
]
JG540_03890
Messenger RNA biogenesis [BR:
awe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JG540_03890
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QQM68318
UniProt:
A0A7T7MBD9
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Position
944540..946210
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AA seq
556 aa
AA seq
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MLKAPGPIPDGALRVVPLGGLGEVGRNMTVFETEGKLLVVDCGVLFPEEDQPGVDLILPD
FDYIRDRLEDVVALVLTHGHEDHIGAVPYLLRLRPDIPLVGSELTLAFVDAKLKEHRIRP
VLHEVKELQEVSYGPFDLEFVAVNHSIPDAMAVMIRTDAGTALVTGDFKMDSLPIDGRIT
DLRSFARFGEEGVDLFCVDSTNAEVPGMVGHENEIGPVLDNVFADSDQQIVVASFASHVH
RVQQVLDAADAHGRRVALIGRSMVRNMGIAAERGYLKVPQGVLVDARDISSLPPGERVLM
ATGSQGEPMAALSRMAHGEHKSISLEPGDTVIFASSLIPGNENSVFRVINQLMRLGARVV
HQGNAKVHVSGHASSEELLHVYNIVQPANVMPIHGEVRHLVANGALAVKTGIAPERVMLC
EDGVVVDLLDGQARIAGAVPCGYVYVDGSSVGEIDETELKDRRILAEEGFVSVYAVVETK
TGTILAGPHIQARGVAEDDAVFDEVLPDLTASLAQALDSGNASAHSLQQVLRRTLGRWVG
RRLRRRPMIVPVVIEA
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgcttaaggcccccggtccgatcccagatggcgcgctgcgcgtggtgcccttgggcggc
ctgggcgaggtcggccgcaacatgaccgtcttcgagaccgagggaaagctcctggtggtc
gactgcggcgtgctcttcccggaggaggaccagcccggcgtcgacctgatcctgccggac
ttcgactacatccgggaccgcctggaggacgtggtcgccctggtgctcacccacgggcac
gaggaccacatcggcgccgtcccctacctgctgcgcctgcgcccggacatccccctggtg
ggcagcgagctgaccctggccttcgtggacgccaagctcaaggagcaccggatccgtccc
gtgctgcacgaggtcaaggagctccaggaggtcagttacggtccctttgacctggagttc
gtggccgtcaaccactccatccccgacgccatggccgtgatgatccgcactgacgcgggc
accgccctggtcaccggcgacttcaagatggactccctgcctattgacgggcgcatcacg
gacctgcgctccttcgcccgcttcggggaggagggcgtggacctgttctgcgtggactcc
accaacgcggaggtccccggcatggtgggccacgagaacgagatcgggccggtgctggac
aacgtcttcgccgactccgaccagcagatcgtggtggcctctttcgccagccacgtgcac
cgggtccagcaggtgctcgacgccgcggacgcccacggccgtcgcgtggccctgatcggc
cgctcgatggtccgcaacatggggatcgctgcggagcgcggctacctcaaggtccctcag
ggcgtgctggtggacgcccgggacatctcctccctgcccccgggcgagcgtgtgctcatg
gccaccggcagccagggggagcccatggcggccctgtcccgcatggcccacggggagcac
aagtccatcagcctggagccgggggacaccgtcatcttcgcctcctcgctgatccccggc
aacgagaactccgtgttccgggtcatcaaccagctcatgcgtctgggggcccgcgtggtg
caccagggcaacgccaaggtgcacgtctcgggccacgcctcctccgaggagctcctgcac
gtctacaacatcgtccagcccgccaatgtcatgccgatccacggggaggtgcgccacctg
gtggccaacggggccctggccgtcaagaccggcatcgcccccgagcgcgtcatgctctgt
gaggacggcgtggtcgtggacctgctggacggccaggcccgtatcgccggggccgtgccc
tgcggctacgtctacgtggacggctcctccgtgggggagatcgacgagaccgagctcaag
gaccgccgtatcctcgccgaggagggcttcgtgtccgtctacgcggtggtggagaccaag
accggcaccatcctggccgggccgcatatccaggcccggggtgtggctgaggacgacgcc
gtgttcgacgaggtgctgccggaccttaccgcctccctggctcaggcgctggactcgggc
aacgcctccgcccactccctgcagcaggtcctgcgccgcaccctgggccgctgggtggga
cggcgcctgcgccgtcggcccatgatcgtgcccgtcgtgatcgaggcctga
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