Acinetobacter wanghuae: GFH30_05985
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Entry
GFH30_05985 CDS
T07048
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
awg
Acinetobacter wanghuae
Pathway
awg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
awg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GFH30_05985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
awg03400
]
GFH30_05985
Enzymes [BR:
awg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GFH30_05985
DNA repair and recombination proteins [BR:
awg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GFH30_05985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
SNF2-rel_dom
ERCC3_RAD25_C
Glyco_tran_WecG
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QGA10966
LinkDB
All DBs
Position
1298622..1302080
Genome browser
AA seq
1152 aa
AA seq
DB search
MFQQEISQLNLSKLKSGEKRWLGNLQGSSTALLLKEIAKQQKCLYMIVARNNQHLSQLES
EFEFYGVKPTIFPDWEILPYDRLSPHQDIVSERLAILSNMPKTGVLLVSASTLAQRVAPT
SWVLGEHFDIHVGQKFDLEQQKKKLIQAGYHLVDTVYDHGEFAVRGSIIDIYASGQAAPI
RIDLFDDEIETLKFFDAETQRTTQTLEHFTVLPAQEFPLKEGRATFRDRYAEFFPTANPK
KNPIYQDVLDGIASPGIEFYLPLFFDATAMKTQSSLLSYLPSHTIVITDKSLEEGLNQFW
ADVERRYDDRRYNVDQPIVAPDALFLSTHQILEQLNHFGRFIAAQEPFEPKAGVINLNAD
VPPRLAVDPKQEKPFALVKQYIDAANHPVLLVAESAGRRETLKDALRSSLGDIPTVDSFD
DFIESLHAIAITNAPLDRGLELKDKLSIISENQLYEHRVVQRRRKRQQEVSEEFLVRSLT
ELSIGAPVVHIDYGVGRYAGLITLSIDDQDHEFLQLDYADAAKVYVPVTNLHLISRYSGG
DPDLAPLHKLGTDAWSKAKRKALEQIHDVAAELLHIQARRAAKPGIHFELDQSLYMQFAS
GFAYEETLDQANAIEATLYDMRQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNNRQVAVL
VPTTLLAQQHYESFKDRFADWPVRIEVLSRFGSSKTHTKTIDDLADGKVDIVIGTHKILQ
ENIKFNNLGLMIVDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSI
IATPPARRLAVKTFVQEQTGDSVKEAILRELLRGGQVYFLHNDVDTIERTAENLRELVPE
ARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPSANTIIIERADKLGLAQ
LHQLRGRVGRSHHQAYAYLLVPSIKGLKGDAEKRLDAIQRASNLGAGFMLATEDLEIRGA
GELLGEQQSGSMQAIGYSLYMEMLEKATKAIQKGKTPNFDAPLSLTAEINLHMPALIPDD
YLGDVHQRLLFYKRISNTDSRDKLDNIRMELIDRFGIPPQSVKQLFAVHQIRLKAEQLGI
TKVDISQQGGHIEFAPDTPVQAVTIIQMMQKHPTYFRMNGGQRLKIMVMLEDYEKRIQFI
QDLLDSLLKELH
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgttccaacaagaaatttcccaactcaatttatctaaactaaaatctggcgaaaaacgc
tggttgggtaacctacaaggctcatcgacggcattattgcttaaagagattgccaagcag
caaaaatgtttatacatgattgtcgcgcgcaataatcaacatttaagccagttagaaagc
gaattcgagttttatggggtaaaaccgaccatttttccagattgggaaattttgccttac
gatcgattatcaccgcatcaagacattgtctctgagcgattggcgattttatcaaacatg
ccgaaaacaggagtgttgttggtttcagcctcgaccttagcgcagcgtgtggcaccgacc
tcatgggtattgggagaacattttgatatccatgtcgggcaaaaattcgatttagagcaa
caaaagaaaaaattgattcaagcgggctatcacttggtagataccgtttatgatcatggt
gaatttgctgtacgtggcagtattattgatatttatgcttcagggcaagcagcaccgatt
cgcattgatctatttgatgatgaaattgaaacactgaaattttttgatgctgaaacccag
cgcaccactcaaacactcgaacattttaccgttttgcctgcacaggaatttccactcaaa
gaagggcgtgcaaccttccgcgatcgttatgcggaatttttccccacggcaaatcccaag
aaaaatccgatttatcaagatgttcttgatggcattgcatcaccggggatcgagttctat
ttgccgctattttttgatgcaacggcaatgaaaacccaaagtagtctactatcgtactta
ccaagtcataccattgtcattacagataagtccttagaagagggattaaaccaattttgg
gcggatgtagaacgccgttatgacgatcgtcgttataatgttgatcagcccattgttgca
cctgatgcgttatttttatcgacccatcaaattttagaacaactcaatcattttgggcgt
tttattgcagcgcaagagccatttgagcctaaagcaggcgtgattaatttaaatgccgat
gttccaccccgtttagcggtcgacccaaaacaagaaaagccatttgcactcgttaaacaa
tatattgatgcagccaatcatccggtcttattggtggctgaaagtgcaggtcgccgtgaa
acactaaaagacgcattgcgttcaagtttgggtgacattccaaccgttgatagttttgat
gattttattgagtctttgcatgcgattgcgatcaccaatgcacctttggatcgcggttta
gaactcaaagacaaactgagtatcatttctgaaaatcagctctatgagcatcgcgtggtg
cagcgccgtcgtaaacgtcagcaagaagtctctgaagagttcttggtgcgtagcttaacg
gaactgtctattggcgcgcctgtggtacatatcgattatggtgtggggcgttatgcgggc
ttaattactttaagtattgacgatcaagatcacgaatttttgcaacttgactatgcggat
gcggcaaaagtgtatgtccccgtgactaatttacatttaattagtcgttatagcggtggt
gatcccgacctagcgccattacataaactcggcacggatgcatggtcaaaagcgaagcgt
aaggctttagaacaaattcatgatgttgcagctgagctgttgcatattcaggcacgtcgt
gcggcaaaaccagggattcattttgagcttgatcaatccttgtatatgcagtttgccagt
ggctttgcttatgaggaaacgctcgatcaagccaatgccattgaagccacactctatgat
atgcgacaagctaaaccgatggatcgcttggtttgtggtgatgtcggctttggtaagact
gaagttgcgatgcgtgcggcttttgtcgctgtacaaaataatcgccaagtggcggtgtta
gtgccgaccactttgcttgcccaacagcactatgaatcttttaaagatcgttttgccgat
tggcctgtacgcattgaagtactatcgcgttttggttcatcgaaaacccataccaaaacg
attgatgatttagccgatggtaaagtcgatattgtgattggtacacataaaattctgcaa
gaaaatatcaaatttaataatcttggtttgatgattgttgatgaagaacatcgcttcggg
gtacgtgacaaagaacggattaaagccttgcgtgcggatgttgatatgctgacgctcacg
gcgacaccgattccacgtaccttaaatatggcatttagtgggatgcgtgatttatcgatt
attgccacaccacctgcacgtcgtctagccgtcaaaaccttcgtacaggagcaaactggc
gattcggttaaagaagcgattctacgagaattactgcgtggtggtcaggtgtatttcctg
cataacgatgtcgatacgattgaacgtactgcggaaaatttacgcgaacttgtgcctgaa
gcacgtgttgcagtcgcacatggacaaatgcgggaacgtgaactcgagcaagtcatgcag
cagttctatcataaagaatataacgttttagtctgttcaaccattattgaaacagggatc
gatgtaccgagtgccaataccattattatcgaacgggcagataaattgggcttggcgcag
cttcatcaattacgtggtcgtgtcggtcgttcgcatcatcaagcctatgcttatttattg
gttccctctattaagggtttaaaaggcgatgccgaaaagcgcttagatgccattcaacgt
gcttctaatttgggtgcgggttttatgcttgccaccgaagatttagaaattcgtggtgcc
ggtgaattattgggtgagcagcaaagtggttctatgcaagcgattggttatagcttgtat
atggaaatgcttgaaaaagccactaaagcgattcaaaaaggtaaaaccccgaacttcgat
gcgccgctttcattgactgccgaaattaacttacatatgccagcacttattccagatgat
tacttgggtgatgtgcatcaacgcttattgttctataagcgtattagtaatactgatagc
cgagataaactcgataatattcgcatggaattgattgatcgctttggtattccaccacaa
tcagtgaaacaactctttgcggtacatcaaatccgtttgaaagcggagcagttgggtatc
accaaagttgatattagtcagcaaggcggacatattgaatttgcaccagatactccggtt
caagcggtgaccattattcaaatgatgcagaaacatccgacctatttccgtatgaacggt
gggcagcgtttgaaaattatggtcatgcttgaggattacgaaaaacgcatacagtttatt
caagatttattagatagtctgttgaaagaattgcactaa
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