Acetobacterium wieringae: CHL1_000493
Help
Entry
CHL1_000493 CDS
T08273
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
awi
Acetobacterium wieringae
Pathway
awi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
awi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CHL1_000493 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
awi03400
]
CHL1_000493 (mfd)
Enzymes [BR:
awi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CHL1_000493 (mfd)
DNA repair and recombination proteins [BR:
awi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CHL1_000493 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
AAA_22
Glyco_tran_WbsX
Motif
Other DBs
NCBI-ProteinID:
URN84903
LinkDB
All DBs
Position
514676..518107
Genome browser
AA seq
1143 aa
AA seq
DB search
MELLYQNLLKGETIQTILNNLTPGEIINLSNVNNSFKEVLTGLIVSQQPRRVLYVTATDY
QAQKTAENLERLLGDQVLYFPAEPIHDYFADVHSQEINHQRLRVFEKLLSDDHFVVVMGA
ETLLKKQMPRERFKELSFSLAVEDSWDPVELTKRLFELGYESVSQVEARGQFARRGGIID
VFSTTGGEAYRIDFFGDTIESLRTFDPQTQLSTDSRNQVTIFPGREIILADDERVKAQKQ
IKKNYGDIPGYQTLVERLNEDPGSHDETLFAFIKSEGMLTDYLGAALVIWDEPPRIKEAQ
TVFVNKLHSDFQTLMDEQLMFSEEKNKFNSFSKIEKVLEIQAQLKLHLFTSRGKKGISLD
LAVKENDAFLGQMPLFIEFVQKKLKQDAIIHLRAQDEAGIEKLKKILTDADIHRFTNQAL
PGVQLVTGEISGGFELTNEKLICINQSEIIKESTQRKKSRRQKGRKIDSFTQLNQGDFVV
HDTHGIGVYRGIEQLKIDETIKDLLVIEYANEAKFYCPVDQLDAIQVYVGTGEKKPKINQ
LGTNDWSKSKSRVKAAVEEMADELIALYAKRQNLKGYAFGPDSSWQQEFEDSFPHEETND
QLQAVDEIKEDMESPRPMDRLLCGDVGYGKTEVALRAIFKAVMEGKQVAFLVPTTILAQQ
HYQTALERFNKYPVSIGLLSRFRSKSDQDKTLKQLAAGQVDLIIGTHRLLSKDVIFKDLG
LLVVDEEQRFGVGHKERIKQLKENVDVLTLSATPIPRTLHMSMIGVRDMSVIDEPPAGRR
PVLTYVMEYNEAIIKDAIERELARRGQVYFVHNRIHDIFEVSRKIQKLVPEARIVVAHGR
MTGQELEDIMIDFLEQEFDVLVTTTIIESGLDIKNANTLIIDNGDYMGLSQLYQLRGRVG
RSDVQGYTYVTHRPKVLSEISQKRLKAIKDFTAFGSGFKIALRDLEIRGAGNILGAAQSG
NLATIGYELYCRILDQAIHERLGKEMDFSASELLINLNVSSYIPEKYIADEELKYDIYKK
LSYVKSQADYDELEDELLDRFGEIPDGVYNLMSLAMIKHLGRMLGMTEIRERGNSVLFTF
DSAREIPIPDPELMKELFNRYNIKFNAGKGDQIRWRIVLKHERDQTYLKALGEFLGQLVP
AKN
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atggaattactttatcaaaacctgttaaagggtgaaacgatccaaaccattttgaataac
ctgaccccgggagaaatcattaatctttctaatgttaacaacagctttaaagaagtgctg
accgggctgattgtaagccagcagccaaggcgagttctgtatgttacggcaaccgattat
caggcccagaagacagctgagaatctggagagactactcggggatcaggtgctttatttc
ccggccgagccaattcatgattattttgctgatgtccacagtcaggaaattaatcatcag
cgtttgcgggtattcgaaaagttattatctgatgaccattttgtggtggtgatgggcgca
gaaacactgttaaaaaaacaaatgccccgagagagatttaaagagctgagtttttccctg
gcagtggaggacagctgggatccggttgaattgacgaagcgcctctttgaattggggtat
gagtcagtatcccaggtcgaggcccggggccagtttgctcgccggggcgggatcattgat
gtgttctccacgaccggtggggaagcctaccggattgatttttttggtgataccattgaa
tcgcttagaacctttgatccccaaacccagttatcaaccgactcgcgtaatcaggtgacg
atttttccggggcgggaaattattctggcggatgatgagcgcgtaaaagcccaaaagcag
attaaaaaaaattatggtgatattcccggttatcagacgctggttgaacggctcaacgaa
gatccgggaagccacgacgaaacgctctttgcctttatcaagtctgagggaatgctcacc
gattatctgggagctgcgctggtgatctgggatgagccgccccgcattaaggaagcccag
accgtttttgtcaataagttgcacagtgattttcagaccctgatggacgaacagttgatg
ttttcagaagaaaaaaacaaatttaattctttttcaaaaattgagaaagtgctggagatc
caggcgcagttaaagctccatttatttacgtcccggggcaaaaaaggaataagcctggat
ttagcggtcaaagaaaacgatgcgtttttaggtcaaatgccgctatttattgaatttgtt
caaaaaaagctcaaacaggatgcgatcattcatttacgggcccaggatgaagcgggtatc
gaaaagctaaaaaaaatattgacggatgcggatattcaccgctttaccaatcaggccctg
ccgggagttcagctggtcactggcgaaatcagtggcgggtttgaattgacaaatgaaaag
ctgatttgtatcaatcaaagtgaaatcatcaaagaatcgacccagcggaaaaaaagccgc
cgtcaaaaggggcgtaagatcgattcctttacccaattgaatcaaggggactttgtagtt
catgatacccacggcatcggggtctaccgggggattgaacaattaaaaatcgatgagacg
attaaagatttattggtcattgaatatgccaatgaagccaaattttactgtccggtggat
cagctcgatgccatccaggtttatgtgggaaccggcgagaaaaagccgaagatcaaccag
ttggggacgaatgactggagcaagtctaaatcccgggtcaaagcggctgttgaagaaatg
gccgatgagctgattgcattatatgccaaacgccagaatttaaagggctatgcctttggt
ccggattccagctggcagcaggagtttgaagattcatttccccatgaggaaaccaacgac
cagcttcaggcggtggatgaaatcaaggaagatatggaatctccccgaccgatggatcgg
ctgctctgcggggatgtcggttatggtaaaaccgaggtcgctttgcgggcgatctttaag
gcggtgatggagggcaagcaggtagcttttctggtgcccaccactattttagcgcagcag
cattaccagacggcgctggagcgctttaataaatatccagtcagcattggcctgctcagc
cgcttccggtcaaaatctgatcaggataaaaccttaaaacaactggctgccggtcaggtg
gatctgatcatcggtacacaccggcttttatcaaaagacgtgatctttaaagatctgggc
ttactggttgttgatgaggaacaacgctttggggttggtcataaggagcggatcaagcaa
ctcaaagaaaatgtcgacgtccttaccctcagtgccaccccgattcccaggaccctgcac
atgtcaatgatcggggttcgggatatgagcgttatcgacgagcccccggcgggccgtcga
ccagttctgacctacgtaatggaatacaacgaagccattatcaaagatgcgattgaacgg
gaactggccaggcggggtcaggtctattttgttcacaaccggattcatgatatctttgaa
gtgtccagaaaaattcaaaaactggttccggaagcccgaattgtcgtggcccatggccgg
atgactggtcaggaactggaagacattatgattgatttcttggaacaggaatttgatgtc
ctggtgaccaccaccattattgaatcgggactggatattaaaaatgccaataccctgatt
atcgacaatggtgattatatggggctgtcccaattatatcagctccggggccgggtggga
cggtcggatgttcagggttatacttatgtaacccatcggcccaaggtgctctcagaaatt
tcccagaaacgcttaaaagccatcaaagactttaccgcttttggttcgggctttaaaatt
gcccttcgggatctggaaatcagaggcgccggcaatattctgggagcggctcagtccggt
aatctggccaccattggctacgagctttattgtcggattctcgatcaggccatccacgaa
cggttgggaaaagaaatggatttctcagccagcgaactgttaattaacctcaatgtcagc
agctatattcctgaaaaatatattgcggatgaggaattaaaatatgatatctacaagaag
ctgtcatatgtcaaatcccaggcagattatgacgaactggaagatgaactgttggatcgc
tttggggaaattccggatggggtttataacttgatgtcactggcaatgattaaacacctg
ggccgaatgctgggaatgactgaaatccgggagcgcggcaattcagtgttattcaccttt
gacagtgccagagaaatacccattcctgatccggaactgatgaaggaactgtttaatcgc
tataatattaagtttaatgccggtaaaggcgatcagatccgttggcggatcgtattaaaa
catgagcgggaccagacctatctcaaagccctgggtgaatttctgggccaactggttccg
gcgaagaattaa
DBGET
integrated database retrieval system
