Acetobacterium wieringae: CHL1_000519
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Entry
CHL1_000519 CDS
T08273
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
awi
Acetobacterium wieringae
Pathway
awi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
awi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHL1_000519
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
awi03019
]
CHL1_000519
03009 Ribosome biogenesis [BR:
awi03009
]
CHL1_000519
Enzymes [BR:
awi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CHL1_000519
Messenger RNA biogenesis [BR:
awi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CHL1_000519
Ribosome biogenesis [BR:
awi03009
]
Prokaryotic type
rRNA helicases
CHL1_000519
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
CMS1
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
URN84922
LinkDB
All DBs
Position
540228..541898
Genome browser
AA seq
556 aa
AA seq
DB search
MKFTELEINEQLLQGIEEMGFVEMTEIQERAIPQLMMGGDLIGKSQTGTGKTVAFAIPAI
TKLDPSIKKVQVLVLCPTRELAVQVSDEFRKVIKYQKGVKVLPIFGGASIEGQIRDLKSG
VQIVVGTPGRVMDHMRRKTLKLSDVSMVVLDEADEMLNMGFREDIELILDEIDHDIQTVL
FSATMPKPILKIAETYQKDPVMIEISPKTMVATSIEQKYFNISDHHKFEALTRLLDVYKP
QRSLIFCNTKKYVDEITDDLKKLGYSVDKIHGDMRQMSRMAVLKDFSRGKLNILVATDVA
ARGIDVDDVDIVFNYDVPDNEEYYVHRIGRTGRAGKSGISLTLARSRDQFRLKKITDYTK
KSIERDLIPTSEVINDIKIAHFHERFKIRADKGTEKGSLDTYLKIIDELVEKGYTAETIA
AVLLQAQLPLSEAEDLNTVERRPRRNDGGPRRDGRDGRSRRDGGSRDGGSRRAGPEKTKR
LFISVGEKDHAQKRDILGAICGECGIPSSAVGNIDMYDKFTFVDVDEEQAKKVEKKLNGK
IIKERKVKVEISKKKK
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttacagaattagaaattaatgaacaactactgcaaggcatcgaagaaatgggc
tttgtagaaatgaccgaaatccaggagcgagcgataccacaattgatgatgggaggagac
ctcattggaaaatcgcaaaccggaacaggaaaaactgttgcctttgcaattccagccatt
acaaagcttgacccttccataaagaaagtacaagttttagttctatgcccaacccgtgag
ttggctgtacaggtctcagacgagtttagaaaagtaataaaataccagaaaggcgtaaaa
gttctgccgattttcggcggggcgtccattgaaggtcaaatcagagaccttaaatccggg
gttcagatcgtcgttggcacccccggccgggtaatggatcatatgcgtcgaaaaacactg
aaactgagtgatgtttcgatggtggtactggacgaagcggatgaaatgttaaacatggga
ttccgggaagatatcgaactgattctcgatgaaattgaccatgatattcagacggtgtta
ttctcagcaacgatgccaaaaccgattttaaaaattgctgaaacttaccagaaagatccg
gtaatgatcgaaatttcgccgaaaacgatggtcgcaaccagcattgagcagaaatacttc
aatatcagcgatcaccataagtttgaagcgttaacccgtttactggatgtttacaaacct
cagcgttcacttattttttgtaacaccaaaaaatatgtcgatgaaatcaccgatgatctg
aaaaaattgggttattcagtcgacaagattcatggtgacatgcgccagatgtcccgaatg
gcggtattaaaagatttcagtcgcggtaaactaaatatcctggtggcaaccgatgtggcg
gcccggggtattgatgtggatgacgttgatatcgtctttaattacgatgtaccggataat
gaagaatattatgttcaccgaattggtcgaaccggccgggctggtaaaagcggaatttcc
ctgaccctggcacgatcaagagatcagttcagactcaagaagattaccgattacactaaa
aaaagtatcgaacgggatctgattcctaccagtgaagtcatcaatgatattaaaattgcc
cacttccacgaacgttttaagattcgggccgataaaggtactgaaaagggcagtctggat
acctatttaaaaattattgacgaactggttgaaaaaggatatactgccgaaaccattgct
gctgtgttgttgcaggcccagttaccgctgtcagaagctgaagatcttaatactgtcgaa
cgacgtcccagacggaatgatggtggtcctcgccgggatggtcgggatggacgcagccgt
cgtgatggcggatccagagatggtggttctcgtcgggctggcccagaaaaaaccaaacgg
ttgtttatcagtgtcggtgaaaaggatcatgcccaaaaacgggatattctgggagcgatc
tgcggtgaatgcggaattccatcgtcagcagtgggtaacattgacatgtatgacaagttt
acctttgtcgatgtggatgaagagcaagctaaaaaagtcgaaaagaaactaaacggcaaa
ataatcaaagaacgtaaagtaaaagtagaaatttctaaaaagaagaagtaa
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