Acetobacterium wieringae: CHL1_001933
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Entry
CHL1_001933 CDS
T08273
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
awi
Acetobacterium wieringae
Pathway
awi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
awi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHL1_001933
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
awi03019
]
CHL1_001933
Enzymes [BR:
awi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CHL1_001933
Messenger RNA biogenesis [BR:
awi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CHL1_001933
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
URN82837
LinkDB
All DBs
Position
complement(1979920..1981224)
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AA seq
434 aa
AA seq
DB search
MQFKNLDIIEPIQKALKAEGYTQPTPIQEQAIPPLLEGNDLLGCAQTGTGKTAAFAIPIL
QKLSYQQRNLKGNRPIKALVLAPTRELALQISDSFKAYGKFLGLKTLVIYGGVSQNPQTK
ALSAGVDILVATPGRLLDLINQKYIRLNQIESFVLDEADMMLDMGMLQEVRKIIKHMPVE
RQNMLFSATMPTEIAKLAGTMLNKPVKVTITPVSSTVEVIEQNVYHVNKANKINLLNHLL
KNKEIVSALVFSRTKHGADKIVKHLERAGHKAQAIHGNKSQNARQLALNNFKERKTRVLV
ATDIAARGIDIDELSHVFNYDLPEVPETYVHRIGRTGRAGLGGSAIAFCDQDEMPLLAGI
EKLTLKSIPVVEVHPFPMVPGPVEVNPGPSRRSLGHQGAAPKNRRSHGDSRGKKERDRFY
AKSKKKDNRSSLNN
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
ttgcaatttaaaaatttagatattattgaaccgattcagaaggctttaaaagctgaaggt
tatacccagccgacaccaattcaggagcaggcgattccaccgttgctggaaggtaacgat
ttattgggatgcgcccagaccggtaccggcaaaaccgccgcctttgcgattccgatttta
cagaagctttcttatcaacagcggaatctcaagggcaaccgcccgattaaagcgctggta
ctggcaccgacccgggagctggccttgcagatcagtgattcctttaaagcctatggcaag
tttctgggccttaaaaccctggtaatttacggcggcgtatcgcagaatccccagaccaaa
gccttatccgccggggttgatatactggtcgccacgccgggccgactgttggatttgatc
aatcagaagtacattcgtctgaaccagatcgagtcctttgttctggatgaggcggatatg
atgttggacatggggatgctccaggaggttcggaaaatcatcaaacatatgccagtggag
cggcagaatatgcttttttcagcaaccatgccaacagaaattgccaaactggcaggaacg
atgttaaataaaccagtcaaggttacgattactccggtgtcatctacggttgaagtgatt
gagcagaatgtttatcatgtcaataaagccaataagatcaatctgcttaaccatctgcta
aaaaacaaggaaattgtttcggccctggttttttcccggaccaagcatggggcggataaa
atcgtcaaacatctggaacgagccggacacaaagcccaggccattcacggcaacaaatcc
cagaacgcccgacaactggccctgaacaatttcaaagaacgtaaaacccgggtactggtg
gcgaccgatattgccgcccgggggattgatattgatgaactgtcccatgtttttaattac
gacctgccggaagtgccggagacatatgttcatcggattggccgaaccggtcgggcgggc
ctgggcgggagtgccattgccttttgtgaccaggacgaaatgcctttactggcagggatc
gaaaaactgaccttaaaatccattccggtggtagaagttcatcccttcccgatggtacct
gggccagtggaagtcaatcctggcccatcccgacgctcgctcggtcatcagggggctgcc
cccaaaaatcgacgcagccatggtgacagccggggcaaaaaagagcgggatcgattttat
gccaaaagcaagaaaaaagataatcgcagtagcctgaataattag
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