Aeromicrobium wangtongii: NQV15_05540
Help
Entry
NQV15_05540 CDS
T09548
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
awn
Aeromicrobium wangtongii
Pathway
awn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
awn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NQV15_05540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
awn03019
]
NQV15_05540
03009 Ribosome biogenesis [BR:
awn03009
]
NQV15_05540
Enzymes [BR:
awn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NQV15_05540
Messenger RNA biogenesis [BR:
awn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NQV15_05540
Ribosome biogenesis [BR:
awn03009
]
Prokaryotic type
rRNA processing factors
NQV15_05540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
UUP14774
LinkDB
All DBs
Position
1093825..1096395
Genome browser
AA seq
856 aa
AA seq
DB search
MLDDNETQNDSTPEAPRTRRRAAGRPAGPPAAVSFAAPVAPPAKRAAKKAAAEPADDDVV
EVRVKKAPAKRPAKKAAAKPEPETLPLDQDEADEPEAEHAPAPTTPAPGATAAMFQAPEP
GLAPARPKPVEVDESSVDDADDGDSDDEEDPDAPRRRRRSRGGRRRRKGETDTDTDESSE
DDSDETEDDGNGGTRRRRRRARAGEGADTQPDDPENTVVRVRNGRSAEDEITGVQGSTRL
EAKKQRRREGREAGRRRAPIVSEAEFLARRESVKREMVVRQRDDYTQIAVIEDNVLVEHY
VARESQTSIIGNVYLGKVQNVLPSMEAAFVDIGAGRNAVLYAGEVDWTTLGNGKARKIED
ALSPGQTILVQVSKDPIGQKGARLTSQVSLPGRFLVLVPGGQTSGISRKLPENERTRLKT
LLKEVLPENTGVIVRTAAEGATEEQLTRDVTALSARWEVIEGKVAAGNAPELLYSEPDLM
IKVVRDLFNEDFHGLVVEGDDAWDMIKGYIDHVAPDLADRVKRWDNPEVDAFTSYRLDEQ
IHKALDRKVFLPSGGSLVIDRTEAMTVVDVNTGKYTGSGGNLEETVTKNNLEAAEEVVRQ
LRLRDIGGIIVVDFIDMVLESNRDLVLRRLVECLGRDRTRHQVAEVTSLGLVQMTRKRIG
TGLLESFSHECEHCHGRGVVIQDVPVEPKRDEPRRGSRGGRGGNGGGGRGTSGSNNNGGG
NRGGGPKPEEPKADQPKAEQPAVEQPAVEQPKAEVPKPEVPKPAAVEQSKQTEPTSQDAP
VAAPVAPAAEAPAPEPAAQPEASAPAEKPATTRRTTRKRGSATKPAGPPAPPESRPLDGG
GNGGDDPVLTSEGQAP
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atgctcgacgacaacgagacacagaacgacagcacccccgaagcgccgcgcactcgtcgc
agggccgccggacggcctgcaggcccgccggcggcggtgagcttcgcggcgccggtcgcc
ccgccggccaagcgcgcggcgaagaaggccgccgccgagccggctgacgacgacgtcgtc
gaggtccgggtcaagaaggccccggccaagcgtccggccaagaaggccgccgcgaagcct
gagcccgagacgctgccgctggaccaggacgaggcggacgagcccgaggcagaacacgcc
ccggcgcccacgacgcccgccccgggggcgaccgctgcgatgttccaggcccccgagccc
ggtctcgccccggcccgtcccaagcccgtcgaggtcgacgagagcagcgtcgatgacgcc
gatgacggcgacagcgacgacgaggaggacccggacgcgccgcgtcgccgccgccgcagc
cgtggcggccgccgccggcgcaagggcgagacggacaccgacaccgacgagtcgtccgag
gacgacagcgacgagaccgaggacgacggcaacggcggcacccgccggcgccgccgccgg
gcccgtgccggcgagggcgccgacacgcagcccgatgaccccgagaacaccgtggtgcgc
gtccgcaacggccgcagcgccgaggacgagatcaccggcgtgcagggctcgacgcgcctc
gaggccaagaagcagcgccgccgcgagggccgcgaggccggccgtcgccgcgccccgatc
gtgtcggaggccgagttcctggcccgccgcgagtcggtcaagcgcgagatggtcgtgcgt
cagcgcgacgactacacgcagatcgccgtcatcgaggacaacgtcctggtcgagcactac
gtcgcccgcgagtcgcagacctcgatcatcggcaacgtgtacctgggcaaggtccagaac
gtcctgccgagcatggaggccgccttcgtcgacatcggcgccgggcgcaatgccgtgctc
tacgcgggtgaggtcgactggacgacgctcggcaacggcaaggcccgcaagatcgaggac
gcgctgtcgcccggccagaccatcttggtgcaggtcagcaaggacccgatcggtcagaag
ggtgcccgtctgaccagccaggtcagcctcccgggccggttcctggtgctcgtccccggc
ggccagaccagcggcatctcgcgcaagctccccgagaacgagcgcacccggctcaagacc
ctcctcaaggaggtcctgcccgaaaacaccggcgtcatcgtgcgcacggccgccgagggt
gccaccgaggagcagctgacgcgcgacgtcaccgccctgtcggcgcgctgggaggtcatc
gagggcaaggtggccgccggcaacgcccccgagctgctgtactccgagcccgatctgatg
atcaaggtcgtccgtgacctgttcaacgaggacttccacggcctggtcgtcgagggcgat
gacgcctgggacatgatcaagggctacatcgaccacgtcgcccccgatctggccgatcgg
gtcaagcggtgggacaaccccgaggtcgacgccttcacgtcgtaccgcctcgacgagcag
atccacaaggcgctggaccgcaaggtcttcctgccgtcgggtggctccctggtcatcgac
cgcaccgaggccatgaccgtcgtcgacgtcaacaccggcaagtacaccggctccggagga
aatctggaggagacggtcaccaagaacaacctcgaggccgcggaggaggtcgtccgtcag
ctgcggctgcgcgacatcggcggcatcatcgtggtcgacttcatcgacatggtgctggag
agcaaccgcgacctggtgctgcgacgcctcgtcgagtgcctcggccgtgaccgcacccgt
caccaggtggcagaggtcacctcgctgggtctggtgcagatgacccgcaagcgcatcggc
accggcctgctggagtcgttcagccacgagtgcgagcactgccacggtcgcggcgtcgtc
atccaggacgtcccggtcgagcccaagcgcgacgagccccgacgcggatcgcgcggcggc
cgcggaggcaacggcggcggtggacgtggcaccagcggcagcaacaacaacggcggcggc
aaccgtggtggcggcccgaagccggaggagcccaaggccgatcagccgaaggccgagcag
ccggcggtcgagcagcctgctgtcgagcagcccaaggcggaggttcccaagcccgaggtc
ccgaagcctgctgccgtcgagcagtcgaagcagacggagccgacgtcgcaggacgccccg
gtcgcggcacccgtcgccccggccgccgaggcgcctgcccctgaaccggccgcgcagccc
gaggcctcagcacccgctgagaagcccgcaacgacccgacggaccacgcgcaagcgtggc
tccgccaccaagcccgccggtcctccggcgccccccgagtcgcgccctttagacggtggt
ggcaacgggggagatgaccccgttttgaccagcgagggtcaggctccgtaa
DBGET
integrated database retrieval system
