Acetobacterium woodii: Awo_c09880
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Entry
Awo_c09880 CDS
T01732
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
awo
Acetobacterium woodii
Pathway
awo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
awo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Awo_c09880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
awo03019
]
Awo_c09880
Messenger RNA biogenesis [BR:
awo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Awo_c09880
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Shikimate_DH
Motif
Other DBs
NCBI-ProteinID:
AFA47776
UniProt:
H6LCJ4
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All DBs
Position
1147732..1149471
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AA seq
579 aa
AA seq
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MTENKNIIASGSQRLEGRSRPKRKPQVQRNKDKLRLIPLGGLGEIGKNLTVFEYKEDIIL
VDCGLKFPDDAMFGIDIVLPDFNYILENQEKVKGVVITHGHEDHIGGLVYLLKKIDIPIY
ATKFTMGLIDKKLKEHGLLTKTTRIIVKPKDRIDIGGFNVEFIRVNHSIADAVGLCIKCA
AATVVHTGDFKIDYHPIGGEIIDLQRFAKIGSQGVDLLMSDSTNVESAGFTPSESTVGPT
LYNLFRGAKGRIIVTTFASNVHRLQQVIDAAVEYKRKVIICGRSMENVSEVAMDLGYLKV
PVNVLVQLKDIKNYKDKELVIITTGSQGEPMAALGRMALGEHRHLTIKKEDMVIISASPV
PGNEKMVSEVINKLVELGSDVIYGRFAEIHVSGHAKQEELKLMITLVKPKHFLPVHGESR
MLMQHAELAVNVGMNKERTFIAENGNILEIDKRSVQIVGKTQAEPILVDGLGVGDIGNIV
LNDRKRLSEDGLFIVVCTMHKGKAISGPDIISRGFVYVRESEELINNAREEVKKALISCE
EKGIIDWNSIKNVIRESLFKYLYEKTQRKPMILPILMEV
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
ttgactgaaaacaaaaacataatagcatcggggagccaacgactagaaggacgttcaaga
ccgaaaagaaaacctcaggttcagcgtaacaaagacaaactgagattaatcccactagga
gggctaggcgaaatcggtaaaaatctaaccgtgttcgaatacaaggaggatatcatcctt
gtcgactgtggtctgaaatttcctgatgacgccatgttcggaattgatatcgtcttgccg
gatttcaattatattctggaaaaccaggaaaaggtaaaaggcgttgtcattacgcatggt
catgaagatcatatcggggggctggtttacttattaaagaaaattgatattcctatctat
gcaactaaatttacgatgggacttatcgataaaaagcttaaggagcacggcctgttaacc
aaaacgaccagaataattgttaaacccaaagatcgaattgatatcggcggatttaatgtt
gagttcattcgagttaatcacagcatcgcagatgctgtcgggctttgcataaaatgtgca
gcagcgactgttgttcatacgggcgattttaaaatcgactatcatccaattggcggtgaa
ataatcgacttgcagcgatttgctaaaattggatcgcagggtgttgacctgctgatgtcg
gacagtaccaacgtcgaaagtgctggattcaccccatctgaaagtactgtcggaccaact
ttgtataacttattcagaggtgctaagggccggattattgtgacgacttttgcttcaaac
gttcatcgtttgcaacaggtgattgacgcggccgttgaatataaacgcaaagtgatcatt
tgtggacgcagtatggaaaacgtcagtgaagtggcgatggatctcggttatctgaaagta
ccggttaacgtcttagttcaattaaaagacattaaaaattataaagataaagaattagtg
attattacgaccggaagccagggagaacccatggctgcattaggaagaatggcattgggt
gagcatcgtcatctgactattaaaaaagaagatatggttattatttcagcatcgccagta
ccaggtaatgaaaaaatggtatccgaagttattaataaattagtcgaacttggttctgat
gttatttatgggcggtttgcggaaattcacgtttccggacatgccaaacaagaagaatta
aagctgatgattacccttgttaaaccaaaacattttcttcccgttcatggagaaagtcgg
atgctgatgcagcatgccgagttggccgttaatgttgggatgaataaggagcgaacgttt
attgctgaaaatggtaatattttagaaatcgataaacgaagtgttcaaattgttggcaaa
actcaggccgaaccgatattagttgacggtttaggagttggggatattggcaacattgtt
ttaaatgatcgcaagcgattatctgaagacggtctttttatcgtcgtctgtacaatgcat
aaaggtaaagcgatttccgggccggatattatttcacgtgggtttgtttacgtgcgcgaa
tcggaagagttaattaacaatgcacgagaagaagtcaagaaagccttgatatcttgtgaa
gaaaaaggtattattgattggaattcaataaagaatgttattcgtgaaagcttatttaaa
tatttatatgaaaaaacccaaagaaaaccaatgatactacccattttgatggaagtataa
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