Acetobacterium woodii: Awo_c29980
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Entry
Awo_c29980 CDS
T01732
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
awo
Acetobacterium woodii
Pathway
awo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
awo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Awo_c29980 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
awo03400
]
Awo_c29980 (mfd)
Enzymes [BR:
awo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Awo_c29980 (mfd)
DNA repair and recombination proteins [BR:
awo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Awo_c29980 (mfd)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
UB2H
RecG_dom3_C
nSTAND_NTPase5
Motif
Other DBs
NCBI-ProteinID:
AFA49726
UniProt:
H6LI26
LinkDB
All DBs
Position
complement(3450917..3454363)
Genome browser
AA seq
1148 aa
AA seq
DB search
MKEENMELLYQNLMQVESIQTILNNINAGEIINLSNLSNSFKEVLTGLIFNQKKKRILYV
TANDYLAQKTAQNLKKILAEQVLYFPAEPIHDYFADVHSQEINHQRLGAFEKFASDQEFV
AVLGAETLLKKQLPQERFQALSFTLAVDDTWDPNKLIAYLLELGYESVSQVEARGQFAHR
GGIIDVFSPTGSAAYRIEFFGDLIESLRTFDPQTQLSIAAVDDVLIFPGREIILTLEERT
KALKQINKSYGQISGYESLIERISEDPSGHDETLFSFVKTEGMLLDYLGDCLIIWDEPPR
IKEAQGLFINKLHNDFQTLMDEQLMFAEEKNKFYSFARIEKALEPQPQLKLHLFTARGKK
GLSLDLGVKENDSLLGQIPLFIELIQKQLQNEAIIQLRARDQDGMKKLKDILTEAEIHRF
TDTVEPGIQLTIGEISSGFELVNDKIICLNQGEIIKEAKRGKKHRRSKGRKIDSFTQLNQ
GDFVVHDTHGIGIYRGIEQLKIDEITKDLMVIEYAHEAKFYCPVDQMDAIQVYVGTGEKK
PKINQLGTNDWSKSKSRVKAAVAEMADELIALYAKRQNLKGYAYGADSNWQQEFEDSFPH
EETNDQLQAVDEIKEDMESPRPMDRLLCGDVGYGKTEVALRAIFKAVMEGKQVAFLVPTT
ILAQQHYQTALDRFKKYPVSIGLLSRFRSKTNQDQTLRELAAGQIDVVIGTHRLLSKDVK
FKDLGLLVVDEEQRFGVGHKERIKQLKENVDVLTLSATPIPRTLHMSMIGVRDMSVIDEP
PAGRRPVLTYVMEYNETIVKDAIQRELARQGQVYFVHNRIHDIFEVARKIQKLVPEARVV
VAHGRMTGAELEDIMIAFLEDEYDVLVTTTIIESGLDIKNANTLIIDNGDYMGLSQLYQL
RGRVGRSDVQGYTYVTHRPKILSEVSQKRLKAIKDFTAFGSGFKIALRDLEIRGAGNILG
AAQSGNLATIGYELYCRILDQAIHERLGKELDFAASELIINLNVSSYIPENYISDEELKY
DIYKKLSYVKSKNDYDELEDELLDRFGEIPDGVYNLMALAMIKHLGRRLGITEIRERGNS
VLFTFDNHQEIPIPEPELMKELFNTYNIKFNAGKGDQIRWRIILKHERDQTYLKTLSDFL
GRLEPAKN
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaagagaacatggaattactttatcaaaacctcatgcaggtcgaatcgatccaa
acaattcttaacaatataaatgccggagaaatcatcaatctctctaatttgagtaacagt
tttaaagaagttcttaccggtctgatcttcaatcagaaaaaaaaacggattctttatgtg
accgcgaacgattatctggctcaaaaaacagcccaaaatttaaaaaaaattttagctgaa
caggtattgtattttccggctgagccgattcacgattattttgccgatgttcatagtcag
gaaattaatcatcagcggttaggcgcctttgagaaattcgcgtcggaccaagaatttgtg
gcggtactgggggcggaaacgctacttaaaaaacaattgccccaagaacgctttcaagcc
cttagttttactttggcggtcgatgatacctgggaccccaataagttgattgcttatctg
cttgaactgggttacgaatcagtttcacaggttgaagcaagaggtcagtttgcgcaccgt
ggcgggattatcgatgttttttcaccgactggtagtgccgcttaccggattgagtttttt
ggcgatttgattgagtcgttaagaacctttgacccgcaaacgcagttgtcaattgcggcc
gttgatgatgttctgatttttcccgggcgggaaattattttaacgttagaggaacgaaca
aaagcgttaaaacaaataaacaaaagttatggccagatttctggttacgaaagtctgatt
gaacgcataagtgaagatcccagtggccatgacgagacgttgttttcctttgttaaaaca
gaagggatgttacttgattatcttggtgattgcctgatcatttgggatgaaccaccgcga
atcaaagaagcccagggactttttattaacaaactccacaacgattttcagacgttgatg
gacgaacagttaatgttcgcggaagaaaaaaataaattttattcatttgcgagaatcgaa
aaagcactggaaccgcaaccgcaattaaagctgcatctatttacggcccgcggtaaaaaa
gggctgtcattagatttaggcgtcaaagaaaatgattcgctgctcggtcagatcccacta
tttattgaattgattcaaaaacaactgcaaaatgaggccattattcaactaagagcccgc
gatcaagacgggatgaaaaaattaaaggacattttgactgaagcggagattcatcgtttt
acggatacggtggagccgggaattcagttgaccattggggaaatcagcagcggttttgaa
ctggtcaatgataaaataatttgccttaatcaaggtgagataattaaggaagcgaagcgg
gggaaaaaacacagacgctcaaaaggccggaaaattgattcgttcacacaactcaatcaa
ggtgattttgtcgttcatgatacgcatggaattggtatttatcgcggcatcgaacaatta
aaaatcgatgaaatcacgaaggatttaatggttattgaatatgcccatgaggccaaattt
tattgcccggttgatcagatggatgctattcaggtttatgttggtaccggcgagaagaaa
cccaaaatcaaccaactgggaacgaacgactggagtaaatcaaaatcccgggtgaaagct
gccgttgccgaaatggcggatgaactgattgccctttatgccaaacgacaaaacttaaag
ggttatgcctatggcgctgattcgaactggcagcaggagtttgaagattcatttccccat
gaggaaacaaatgaccagctacaggcggttgatgaaataaaagaagatatggaatcaccc
cggccgatggatcgtttgctttgcggggatgtcggttatggtaaaaccgaggtcgcactg
cgggcgatcttcaaggcagtcatggaaggcaaacaagtggcttttttagtgccgaccacc
attttagcccaacagcattatcaaaccgcattggatcgctttaaaaaatatccggttagc
attggtttgttaagtcgttttagaagtaaaacgaatcaggatcagactttaagagaattg
gccgccgggcagattgatgtcgtgatcggaacccatcgattgttatcgaaggatgtcaaa
ttcaaagatttgggtttgctggtagtcgatgaggaacaacgttttggggtggggcataaa
gaacggattaaacaacttaaagaaaatgtcgatgtgttaaccctgagtgccacgccgatt
ccccgaaccttgcatatgtcaatgattggggttcgcgatatgagtgttattgatgagccg
ccagcgggtcggcgtccggtcctaacctatgtgatggaatacaatgaaacgattgttaaa
gatgccatccaacgggaattagccagacaaggacaggtctatttcgtccataaccggatt
cacgatatttttgaagtggcgcgaaaaattcaaaaactggttccggaggctcgggtggtg
gtcgctcatggccgaatgaccggtgctgaactggaagatattatgatcgcctttttagaa
gatgaatacgatgtcctggtgaccacgaccattattgaatcaggtctggacatcaaaaat
gccaatacgttgattattgacaacggcgattatatgggcctttcgcaattgtaccaactg
cgtggtcgcgtcgggcgctccgatgttcaggggtatacctatgtgactcaccggcctaaa
atattgtcggaggtatcccagaagcggttaaaggcgattaaagactttacggcttttggt
tccggctttaaaattgctttacgagatcttgaaatacggggcgcgggaaatatcctgggg
gccgctcagtcgggaaatttggcaaccatcggttatgaactgtattgccggattctggat
caagcgatccatgaacggctcggaaaagaactggattttgcagccagcgaactgattatt
aatttgaatgtcagcagttatattcctgaaaattatatctccgatgaagaactcaaatat
gatatttataaaaaattgtcttatgtcaaatcaaaaaacgattatgatgagctggaagat
gaactgttagatcgctttggtgaaataccggatggcgtctacaatctgatggccttagcg
atgatcaaacatctgggtcgcaggcttggcatcacggagattcgggagcgtggaaacagc
gttttgttcacctttgacaatcatcaggaaataccgattccagaaccggaattgatgaaa
gaattattcaatacctataatattaagtttaatgccggaaaaggggaccaaattcgctgg
cggattattttaaaacatgaacgggatcaaacgtatttaaagaccttgagtgactttctt
ggccgcttagaacctgcgaagaattaa
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