Arthrobacter woluwensis: G8758_08260
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Entry
G8758_08260 CDS
T08936
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
aww
Arthrobacter woluwensis
Brite
KEGG Orthology (KO) [BR:
aww00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aww03019
]
G8758_08260 (hrpA)
Enzymes [BR:
aww01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
G8758_08260 (hrpA)
Messenger RNA biogenesis [BR:
aww03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
G8758_08260 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
DEAD
Helicase_C
AAA_22
AAA_19
nSTAND3
AAA_30
AAA_16
T2SSE
PhoH
HA2_N
ABC_tran
SLFN-g3_helicase
TsaE
Myosin_head
Motif
Other DBs
NCBI-ProteinID:
QTF71995
LinkDB
All DBs
Position
1810392..1814465
Genome browser
AA seq
1357 aa
AA seq
DB search
MPLNITYPAALPVSERREDIMAAISENQVVIVAGETGSGKTTQLPKMCLELGLAEHGLIG
HTQPRRLAARTVAERIAEELDVELGQEVGYQVRFTGEVGPQTQVKLMTDGILLAEIQRDR
LLRKYSVIIVDEAHERSLNIDFILGYLKRLLPQRPDLKIIITSATIDPERFARHFGGEDA
PAPIVEVSGRTYPVEIRYRPLSEPGSEEELDDELEEDRDPVDAVCDAVDELSREAPGDIL
VFFSGEREIREAAEALQGRLPRNPRLADAEILPLFARLSLAEQHKVFNPGPRRRIVLATN
VAETSLTVPGIKYVIDTGTARISRYSHRTKVQRLPIERVSQASANQRSGRCGRVSDGIAI
RLYSEDDFLGRPEFTDPEILRTNLAAVILQMIAIGVARTPKDVEGFPFVESPDTRAVNDG
VTLLRELGALPAPGETADGVPSEGTGVKGTSTDGAAQAGRRGRGGGRGRGERSGGRKPSG
LTAVGHQLAQLPVDPRLGRMIVEAARRGCAREVMVLAAALTIQDPRERPTDKQQQAAEKH
ARFKDEKSDFTGYLNLWNYLQEKQRELSSSQFRRLCRTEFINYLRVREWQELYAQLRQLA
KPLGITVDNNRDTDPVGLHDVIHQSLLSGLLSQIGLYDERKREYAGARGTRFAIFPGSAL
FKKSPAFVMAAELVETSRLWARVAAAFAPEWAEQVAPQLVKRTFSEPHWSSKSGSVMAYE
KVTLYGVPIIPKRRVNYASVDPELCRELFIRHALVDGEWRTHHKFFQRNRALLREVEELE
TRMRRRDIRADDETLFEFYDQRIGREVVSERHFDAWWKQARRQDPGLLDFDRALVMSDEA
DDLDESAFPRTWHQQGFEFPLSYEFHPVAPGATPDPSDGATVEIPALFLNQVDPEPFRWQ
IPGQRVELVTALIKSMPKAVRKNFVPAPDVARQAVTALEADFSPTEDRIEEALALTLRRL
RGQVVPEGSFSWDSVPPHLRMSFRVVDAKGKVLGESKDLAALQDELAPATRRAIAESLGA
TPRSVNGTPGRAAQAAGKGAAGARTPDGPRTAGAQPGLHASGIAELSALKDWAALTAASG
GVIQRSVSRQLGGHTVTGYPALVDEGATVGLRVFQTAERQEAAMRAGVIRLLALKIPAPD
RYVLEHLSNTEKLTFSQNPHGSVSELIADCAQAAIDKLVPVQLPWDARAFDALYEQVRAD
LIDTVFTVTAVVERVLASARRIEKQLKGSTSLALISALNDEKSHLSQLVYRGFVAQTGYQ
QLAQLPRYLTAIERRLEKLPTNVQRDANNMAVVQRLEDEYDDAVAALRSGEGPGPELTHV
RWMLEELRVSLFAVELGTQYSVSEKRIRVALNKALAP
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atgcctctgaacatcacataccccgccgcgctccccgtctccgaacggcgcgaggacatc
atggccgccatctcggagaaccaggtggtcatcgtggccggcgagaccggctccggcaag
accacccagctgccgaagatgtgcctcgaactggggctggccgagcacggtctgatcggc
cacactcagccgcgccgactggcggcccgcaccgtcgcggagcgcatcgcggaggaactg
gacgtggaactcggccaggaagtgggctaccaggtccgtttcacgggtgaggtggggccg
cagacccaggtcaagctgatgacggacggcatcctgctcgcggagatccagcgggaccgc
ctgctgcggaaatacagcgtcatcatcgtggacgaggctcacgagcgcagcctcaacatc
gacttcatcctcggatacctcaagcgtctgctgcctcagcggccggatctgaagatcatc
atcacctcggccacgatcgatcccgagcgcttcgcccggcacttcggcggtgaggacgcc
ccggcgccgatcgtcgaggtctccggccgcacgtaccccgtggagatccgttaccgcccc
ctgtccgaaccgggcagcgaggaggaactggacgacgagctcgaagaggaccgtgacccg
gtggacgcggtctgcgatgccgtggatgaactctcccgggaggcccccggcgacatcctg
gtgttcttctccggcgagcgcgagatccgcgaagctgcggaagcgctgcagggccggctc
ccccgcaatccccgcctggccgacgccgagatcctgccgctcttcgcccggctgagcctc
gcggagcagcacaaggtgttcaacccgggaccgcgtcgtcgcatcgtcctggccaccaac
gtcgccgagacctccctgaccgttcccggcatcaagtacgtgatcgacaccggcaccgcc
cgcatctcccggtattcgcaccggaccaaggtgcagcggctgcccatcgaacgcgtctcc
caggcatccgcgaaccagcgctccggccgttgcggccgtgtcagcgacggcatcgccatc
cggctgtactcggaggacgatttcctcggccgtcccgaattcaccgaccccgagatcctg
cgcaccaatctcgccgccgtcatccttcagatgatcgcgatcggcgtcgcgcgcacgccg
aaggacgtcgagggcttcccgttcgtcgagtcgcccgacacgcgcgcggtcaacgacggc
gtcacgctcctgcgggagctcggcgcccttccggcgcccggcgagacggccgacggcgtt
ccttccgaggggacgggcgtcaaggggaccagcaccgacggcgccgcccaggccggccgg
cgcgggcgcggcggcggacgaggccgtggcgagcgttccgggggccgcaagccgtccggg
ctgaccgccgtcgggcatcagctggcccagctccccgtggatccgcgcctcggccgcatg
atcgtggaggccgcccgccgcggttgcgcccgcgaggtcatggtgctggccgccgcgctg
accattcaggacccgcgggaacggcccacggacaagcagcagcaggccgcggagaagcac
gcccgcttcaaggatgagaagagcgacttcaccggctatctgaacctgtggaactatctg
caggagaagcagcgggaactctcctcgagccagttccgccggctgtgccgcaccgagttc
atcaactatctgcgggtccgggagtggcaggagctctacgcgcagctccggcagctcgcc
aaaccgctcggcatcaccgtggacaacaaccgggacaccgaccccgtgggcctgcacgac
gtgatccaccagtcgttgctgtccgggctgctcagccagatcggactctacgacgagcgc
aaacgcgagtatgcgggcgcccggggcacccgcttcgcgatcttccccggctcggcgctg
ttcaagaagtcccctgctttcgtcatggcggccgaactggtcgagaccagccgtctctgg
gcgcgggtcgccgcggcgttcgccccggagtgggccgagcaggtggccccgcagctggtc
aagcggaccttcagcgaaccgcactggtcctcgaagtccggctccgtcatggcgtacgag
aaggtcacgctctacggcgtgcccatcatccccaagcgccgcgtcaactatgcctccgtg
gacccggaactctgccgcgaactgttcatccggcacgccctggtggacggcgaatggcgt
acacaccacaagttcttccaacgcaaccgcgccctcctgcgggaggtggaggaactcgag
acccgcatgcgccgccgcgacatccgggcggatgacgagacgctgttcgagttctacgac
cagcggatcggccgcgaggtcgtctctgagcggcatttcgacgcctggtggaagcaggca
cgccggcaggatccggggctactcgacttcgaccgggccctcgtcatgagcgacgaggcc
gatgacctggacgagtccgccttcccccggacgtggcatcagcagggcttcgaattcccg
ctgagctacgagttccatcccgtcgctccgggcgccacgccggatccctccgacggcgcc
accgtggagatcccggcgctgttcctgaaccaggtggatcccgagcccttccgctggcag
atccccggccagcgcgtcgagctcgtcaccgccttgatcaagtccatgcccaaggcggtc
cggaagaacttcgtcccggcgccggacgtcgcccgtcaggccgtgacggcgctggaggcc
gacttctcccccaccgaggaccggatcgaggaggctctggccctgacgctgcggcggctc
cgtggccaggtggtccccgagggcagcttctcctgggactccgtgccgccccatctgcgc
atgagcttccgcgtggtggacgcgaagggcaaggtcctcggggagagcaaggacctcgcc
gcgctccaggacgaactcgcccccgccacacgccgcgccatcgcggagagcctgggcgcc
acgcccaggtccgtgaacggcacgccgggtcgcgctgcccaggccgctgggaagggcgcc
gccggtgcgcgcaccccggacggcccgaggacggcgggcgcccaaccgggcctgcacgcc
tcgggcatcgcggagctgagcgcgctcaaggactgggccgcgctgaccgccgcgagtggc
ggcgtgatccagcgcagcgtgagccggcagctcggtggccacacggtcacggggtacccg
gcgctcgtggacgagggcgccacggtcggcctgcgcgtgttccagacggcggaacgccag
gaggccgccatgcgggccggtgtcatccgcctgctcgccctgaagatccccgcaccggac
cgctacgtcctggagcatctgagcaacaccgagaaactgacgttcagccagaacccgcac
ggcagcgtgagcgagctgatcgcagactgcgcccaggccgcgatcgacaagctcgtgccg
gttcagctcccgtgggatgccagggcgttcgacgcgctctacgagcaggtgcgggccgac
ctcatcgacacggtgttcacggtgaccgcggtggtcgagcgtgtcctcgccagcgcccgc
cgcatcgagaagcagctcaagggcagcacgagcctggccctcatcagcgccctgaacgac
gagaagagccatctgtcccagctcgtgtaccgagggttcgtcgcgcagacgggttaccag
cagctcgcgcagctgccccggtacctgaccgccatcgaacgccggctggagaagctgccg
acgaacgtccagcgcgacgccaacaacatggccgtcgtccagcgcctggaggacgagtac
gacgacgccgtggcggcactccgctcgggcgaaggacccggccccgagttgacccatgtg
cgctggatgctcgaggagttgcgggtcagcctgttcgccgtcgagctcggcacgcagtat
tcggtgagcgagaagcggatccgcgtcgcgctgaacaaggccctcgcaccctga
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