Alloalcanivorax xenomutans: P40_13240
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Entry
P40_13240 CDS
T04770
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
axe
Alloalcanivorax xenomutans
Pathway
axe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
axe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P40_13240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
axe03019
]
P40_13240
03009 Ribosome biogenesis [BR:
axe03009
]
P40_13240
Enzymes [BR:
axe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
P40_13240
Messenger RNA biogenesis [BR:
axe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
P40_13240
Ribosome biogenesis [BR:
axe03009
]
Prokaryotic type
rRNA processing factors
P40_13240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ARB46246
LinkDB
All DBs
Position
2890278..2893670
Genome browser
AA seq
1130 aa
AA seq
DB search
MLINAAHPEEVRVALVDGQRLYDLDIEHRSREQKKANIYKGKITRIEPSLEAAFVDFGAE
RHGFLPLKEISRQYFTKDPKDIQGRINIKDVIKEGQEVIIQVDKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERQQLKEALASLKLPDEMGVIVRTAGLGRGAEELQW
DLDYLLKLWDSISEAAQSRKAPFLIYQESNVIIRAIRDYLRKDIGEVLIDSEKVFEEAQA
FVQQVMADYKHKIKLYNEEIPLFSRFQIESQIETAFEREVKLPSGGSIVIDPTEALVSID
INSSRATKGADIEETALQTNLEAADEIARQLRLRDIGGLIVVDFIDMGPARNQREVENRM
RDALEADRARIQLGRISRFGLLELSRQRLRPSLGETSSIVCPRCNGQGHIRDVKSLALSI
LRLIEEEVMKERTGEIQAQVPVAVGTFLLNEKRPVLRDIETAHNARVLVIPNPNLETPHF
LVERIRDDQVKSQTSHELELVDNSAEEPVTNTQEAPAKPQEPAVKLITPDTAPPTPKAQP
ATAAPAAAAAAAAESTPGLFARLLGWFAAVFGGGAGQEQKQQSKGGQKDGRRQQERTPQN
RDQRGNRDKERGRGQQQRGNNRNTRNRRDDTEQQDDNRRGNRGNQNRNRNKADGRDGDNA
GGNNRRGRNRGGDRSSDNKSTDNKSSDAKSSDAKANESQGRQERRGEGPKANRRQDAKDD
RPLRERERPRKSQDDRKAQQQDAPQQNAEQQKGGDTQQRKDESRNDGGKTAAQRDNDQRR
NDQRPQNAGRGEPQADNKQDAGKGGAPVQPPLMTSEDNTPGRDQERGDSRPPKAKLVPAQ
ESGEGNAQAEQAPVQAKPAQAKSAQDGDAKDAPAEQQSAKQQNDHSRQQHDKPVSKPQQP
EQESKREAPKPAAEAPARDEKPAASAEAEEQPVRRAGNDPRQRNRQAAAQAETKPQAPEP
EKTNGGPATQPEQVAKPVEEKPATETPQPAVERAPAPAKTAEKAAEKAEASKPAPAEQPK
PETPAAEPKAEPKEKPVAEPKAEAKAETPPSGDTKPAADSKPVEAAKPAVSPEQPAPASD
AKGSGPEAAPQAPAAAPQGRASNDPRLRRRQQQQQAAAAADSTKDADTGA
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgttgatcaacgccgcccatcccgaagaggttcgggtggccctggtggacggccagcgt
ctttatgacctggatatcgaacaccgctcccgcgagcagaaaaaagccaatatctacaaa
ggcaagatcactcgcattgaaccctctcttgaagccgctttcgtggacttcggcgccgaa
cgccatggttttctgccgctgaaggaaatttcccgtcagtacttcaccaaggatcccaag
gacatccagggtcgcatcaacatcaaggatgtgatcaaggaaggccaggaagtgatcatc
caggtggacaaggaagagcgcggcaacaaaggcgccgccctgaccaccttcatcagcctg
gccggccggtatctggtgctgatgcccaacaatccacgcgccggcggcatttcccgccgt
atcgagggtgaggaacggcagcagctcaaggaagctctggccagcctcaaactgcccgac
gaaatgggcgtgatcgtgcgcaccgccggtcttggccgtggcgccgaggagctgcaatgg
gacctggactacctgctcaaattgtgggattccatttccgaagcggcgcaatcccgcaag
gccccgttcctgatctatcaggaatccaatgtcatcatccgcgccatccgcgactacctg
cgcaaggacatcggcgaggtgctgatcgactccgaaaaggtgttcgaggaagcccaggcc
ttcgtccagcaggtgatggctgactacaagcacaagatcaaactctataacgaggagatc
ccgctgttctcccgtttccagatcgaatcccagatcgagaccgcgttcgaacgggaagtg
aaactgccttccggcggctccatcgttatcgatcccaccgaagcactggtgtccatcgac
atcaactcctcccgtgccaccaagggcgcggacatcgaggaaaccgccctgcagaccaac
ctggaagccgccgacgagatcgcccggcaactgcggctgcgggatatcggcggcctgatc
gtggtggacttcatcgatatggggccggcccgcaaccagcgcgaagtggaaaaccgcatg
cgcgacgccctggaagcggaccgcgcccgaattcagttgggccgcatttcgcgcttcggg
ctgctggaactgtcccgtcagcggctgcgccccagcctcggcgagacttccagcatcgtc
tgcccgcgctgtaatggtcagggccatatccgcgatgtgaaatccctggcgctgagcatt
ctgcgcctgatcgaagaagaggtgatgaaggagcgcaccggcgaaatccaggcccaggtg
ccggtggccgtgggcaccttcctgctcaacgaaaaacgccccgtgctgcgcgatatcgaa
accgcgcacaacgcccgagtgctggtgatccccaatccgaacctggaaacacctcacttc
ctggtcgaacggatccgcgacgatcaagtcaaatcgcagaccagtcacgagctggagctg
gtggacaacagcgccgaggagcccgtcaccaatacccaggaagcaccggcgaaaccccag
gagccggcggtcaagctgatcactccggacaccgccccgccaacgcccaaggcgcaaccg
gcgaccgcggcaccggcagcggcagcggcggctgcggccgaaagcactcccggcctgttc
gcccgactgctcggctggttcgcagccgtgttcggtggcggtgccgggcaggaacagaaa
cagcaatccaagggcggccagaaagacgggcgccgccagcaggaacgcacgccccagaac
cgtgaccagcgcggcaaccgcgacaaagagcgcggccgtggtcaacagcaacggggtaac
aaccgtaatactcgtaaccggcgggatgacacggagcagcaggacgataaccgtcgtggt
aaccgtggcaaccagaatcgcaaccgcaacaaggcggatggccgcgacggtgacaacgcc
ggcggcaataatcgccgtggtcgcaaccgtggtggcgaccggtcctcggacaacaagagc
acggacaataaatccagcgacgccaagtccagcgatgccaaggccaacgagagccagggc
cgtcaggaacgccgcggcgaaggccctaaagccaaccgccgtcaggacgccaaggatgat
cgtccgctgcgcgagcgtgaacggccgcgcaagagccaggacgatcgcaaagctcagcaa
caggacgctccgcagcaaaacgctgaacagcaaaagggtggcgatactcagcaacgcaag
gacgagtcccgcaacgatggcggcaagaccgccgcgcaacgggacaatgaccagcgccgc
aatgatcagcgcccgcaaaacgccggccggggcgagccccaggcggacaacaagcaggac
gccggcaagggcggcgctccggttcaaccgccgctgatgaccagcgaggacaatacgccg
ggacgcgatcaggaacgcggcgacagccgtccgcccaaggccaagctggttccggcccag
gaaagcggcgaaggcaatgcacaagccgagcaggcaccggtccaggccaaaccggctcag
gccaaatctgcccaggatggcgatgccaaagacgctccggcggagcaacaatcagcgaag
caacaaaacgaccattcccggcagcagcacgacaagccggtgagcaagccacaacagccc
gaacaggaaagcaagcgggaagcaccgaagcccgccgccgaagcaccggcccgggacgag
aaaccggcggcctccgccgaagcggaagagcaaccggtacggcgtgccggcaacgatccg
cgccagcgtaaccgccaggccgcggctcaggccgagaccaagcctcaagcgcccgagccg
gaaaaaaccaacggcggcccggccacgcagccggaacaggttgccaaaccggtagaggaa
aagccggcgacggaaacaccgcaaccggcggttgagcgcgcccctgctccagcgaagacc
gcggagaaagcagcggaaaaagccgaggccagcaagccggccccggccgagcagccgaaa
ccggagactccggcggctgaaccgaaagcagaaccgaaagaaaaaccggtagccgagccg
aaggcggaagcgaaggccgaaacgccccccagcggcgacaccaagccggcggcagacagc
aaaccggtggaagcggcgaagccggcggtcagcccggaacagccggcaccggcgagcgat
gccaaaggcagcggccccgaagccgcgccccaagcaccggccgccgctccgcaaggccgg
gccagcaatgacccgcgcctgcgccgccgccagcaacaacagcaggcggccgccgcggcg
gacagtaccaaggacgccgacaccggcgcctga
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