Alloalcanivorax xenomutans: P40_18285
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Entry
P40_18285 CDS
T04770
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
axe
Alloalcanivorax xenomutans
Pathway
axe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
axe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
P40_18285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
axe03021
]
P40_18285
03400 DNA repair and recombination proteins [BR:
axe03400
]
P40_18285
Enzymes [BR:
axe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
P40_18285
Transcription machinery [BR:
axe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
P40_18285
DNA repair and recombination proteins [BR:
axe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
P40_18285
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ARB47123
UniProt:
A0A9Q3ZDS1
LinkDB
All DBs
Position
complement(3977478..3981680)
Genome browser
AA seq
1400 aa
AA seq
DB search
MKDLLNLLKSQGQVTEFDKIRIGLAPPDLIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVTEPGMTTLERGQLLTDEEYFDALEQFGDEFEAKM
GAEAVQQLLQDLDLRDEINTLREEIDSTNSDTKLKKLSKRLKLMEAFQASGNEPEWMIMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHECGLPKKMALELFKPFIFSKLEGRGLATTIKAAKKMVERETAEVWDILAEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIGPTQDVVLGLYYISREKVNVKGEGRVFADTKEVMRALGTK
EVDLHARIKVRLEDVVKDQEGNIHREWRIADTTPGRCKIWDIVPEGIGFDMVNQNMTKKA
ISKLLNTCYRILGTKETCIFADQIMYLGFREATLSGSSIGVEDMVIPQAKYELIGKAEEE
VREIEEQFASGLVTRGERYNKVVDIWSRTNDQIAKAMMENLKTEVVKNREGKDEEQGSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITSNFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVITEEDCGTEQGLIMTPLIEGGDVVEPLRERVL
GRVVARDVMNPLNQDEVAVEAGTLLDEVWVDKLEAMGVDEVKVRSSITCATRWGVCSACY
GRDLARGHRVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAVSSIQIKHGGKVR
FHNAKHVTHKDGLVIVSRSAELAVADDLGRERERYKVPYGALVTVNEGDSVDGGQVVATW
DPHTHPIIAEVAGKVQFGDMEEGIAVNYQTDELTGLTNIEVMPSQDRPSAGKDLRPVVRV
VDGKGKAVSLPNTDAPANYFLPGGALCGLKNGADISVGDVIARIPQESSKTRDITGGLPR
VADLFEARNPKEAAILAEKTGTVSFGKETKGKVRLVITPDDGGDTYEELIPKWRQLNVFE
GEHVEKGEVVSDGPLNPHDILRLKGEVELARYIVNEVQEVYRLQGVKINDKHIETIIRQM
LRKVEITEVGESTFIKGEQVEYARVMEELDRLKGEDKMRPQFERMLLGITKASLATESFI
SAASFQETTRVLTEAAVTGKEDDLRGLKENVVVGRLIPAGTGYAYHMDRRRQRADARGDG
PTMDEVEAALSEALSSSGQE
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacttgctgaatttgctcaaaagtcagggacaagtcacggagtttgacaagatc
cgcatcggtctcgcaccgccggatctgatccgctcctggtcttttggcgaagtgaaaaag
ccggagactattaactaccggacctttaagccggagcgtgatggcctgttctgcgcgcgc
atttttggtccgatcaaggactacgaatgcctgtgcggtaagtacaagcgtctcaagcac
cgtggtgtgatctgtgagaagtgtggcgttgaagtcacgctctccaaggttcgccgtgag
cgcatgggccatatcgaactggccagcccggttgcccacatctggttcctgaagtcgctg
ccgtcccgcattggtctgatgctggacatgaccctgcgcgacatcgagcgggtgctgtac
ttcgaatcctttgtcgtaaccgagccgggcatgaccaccctggaacgtggccagctgttg
accgacgaagagtacttcgatgcgctggaacagttcggtgatgagttcgaagcgaagatg
ggcgcggaggcggtgcaacagcttctgcaggacctggacctgcgcgacgagatcaacacg
ctgcgtgaagagatcgactccaccaactccgataccaagctgaagaagctgtccaagcgg
ctgaagctgatggaggccttccaggcttccggtaatgagccggagtggatgatcatgacc
gttctgccggtgctgccgccggatctgcgtccgctggtaccgttggatggtggccgcttc
gccacttccgatctgaacgatctgtatcgccgggtgatcaaccggaataaccgtctcaag
cgcctgctggacctgaatgccccggacatcatcgtgcgtaacgaaaaacgcatgctgcag
gagtccgtggacgcgttgctggataatggccgccgcggccgtgccatcaccggttccaac
aagcgcccgctgaagtccctggcggatatgatcaagggtaagcaagggcgtttccgtcag
aacctgctcggtaagcgggtggactactccggtcgttccgtgatcgtggtggggccgacc
ctgaagctgcacgagtgcggtctgccgaagaagatggcgctggaactgttcaagccgttc
atcttctccaaactggaaggacgcggcctggccaccaccatcaaggcggccaagaagatg
gtcgagcgcgagacagccgaggtctgggatattctggccgaggtgatccgcgagcacccg
gtgatgttgaaccgggcgccgacgctgcaccgtcttggcatccaggcattcgagccggtg
ctgatcgaaggtaaggcaattcagttgcacccgctggtgtgtgccgccttcaacgccgac
ttcgacggtgaccagatggcggtgcacgtgccgctgaccctggaagcgcagctcgaagcc
cgggcgctgatgatgtccaccaacaacattctgtctccggccaatggtgagccaatcatc
ggcccgacccaggacgtggtgctgggtctgtactacatcagccgcgagaaggtgaacgtc
aaaggcgaaggccgggtgttcgccgacaccaaggaagtgatgcgcgccctggggaccaaa
gaggtggatctgcacgcccgcatcaaggtgcgcctggaagatgtggtcaaggatcaggaa
ggcaacattcaccgggaatggcgtatcgcggataccactccgggccgctgtaaaatctgg
gacatcgtgccggaaggcatcggcttcgacatggtcaatcagaacatgaccaagaaggcg
atctccaagctgctgaacacctgttaccggatcctgggtaccaaggaaacctgcatcttc
gctgaccagattatgtatctgggcttccgtgaagcaaccctgtccggctcctccattggt
gtggaggacatggtgattccgcaggccaagtacgagctgatcggcaaggccgaggaagag
gtgcgcgagatcgaggagcaattcgcttccggtctggtaacccgcggtgagcgttataac
aaggttgtggacatctggtcccgtaccaacgaccagatcgccaaggcgatgatggagaac
ctgaagaccgaagtggtgaaaaaccgcgaaggcaaggacgaagagcaaggctccttcaac
tccatcttcatgatggcggattccggggcgcggggttccgccgctcagattcgtcagctg
gcgggcatgcgcggcctgatggccaagccggacggctccattatcgaaacgccgattacc
agtaacttccgtgaaggtctgaacgtactgcagtacttcatctccactcacggtgcccgg
aaaggtctggcggataccgcattgaagaccgcgaactccggttacctgacccgtcgtctg
gtggacgtggcccaggatctggtgatcaccgaggaagactgcggcaccgagcagggtctg
atcatgaccccgctgatcgagggtggtgatgtggtcgagcccctgcgtgagcgggtgctg
ggccgggtcgtggctcgcgacgtgatgaatccgctgaaccaggacgaagtggccgtggaa
gccggcaccctgctggacgaagtgtgggtggacaagctggaagccatgggtgtggacgaa
gtgaaagtgcgttcctccattacctgtgccacccgctggggtgtatgttccgcctgttac
ggccgtgatctggcccgtggccatcgggtcaacgtgggcgaggcggttggcgtgatcgcg
gcccagtccattggtgagccgggtacccagctgaccatgcggactttccacattggtggc
gcggcaagccgggcctccgcggtgtccagcatccagatcaaacacggcggcaaggtgcgt
ttccacaacgccaagcacgtgacccacaaagatggtctggtgatcgtttcccgttcagcc
gagctggcggtggccgatgacctgggtcgtgagcgcgagcgctacaaagtgccctacggt
gctctggttacggtaaacgaaggggattccgtggacggtggccaggtcgtggcgacctgg
gatccgcacacccacccgatcattgccgaagtggcgggtaaggtgcagttcggtgatatg
gaagaaggtattgccgttaactaccagaccgatgagctgaccgggctgaccaacatcgag
gtcatgccgagccaggatcgtccgtccgcgggtaaggacctgcgtccggtggtccgggtg
gtggatggcaaaggcaaggcggtgagcctgccgaataccgatgccccggccaactacttc
ctgcccggtggcgccttgtgcggcctgaagaacggggctgatatctcggtgggtgacgtg
atcgcgcggatcccgcaagagtcttccaagacccgggatatcaccggtggtctgccgcgg
gtggcggatctgttcgaggcccgtaatccgaaggaagcggctatcctggcggaaaaaacc
ggtaccgtgtcctttggcaaggaaaccaagggcaaggtgcgtttggtgatcaccccggat
gatggtggcgacacctacgaggaactgatccccaaatggcgtcagctcaacgtgttcgaa
ggcgagcacgtggagaaaggcgaggtggtttccgacggcccgctgaacccccacgacatt
ctgcgtctcaagggtgaggtggagctggcccgctatatcgtcaacgaagtgcaggaggtt
taccgcctgcagggtgtgaagatcaacgataagcatatcgaaacgatcatccgccaaatg
ttgcgtaaggtggaaatcaccgaagtgggcgagtcgaccttcatcaagggtgagcaagtg
gaatacgcccgggtgatggaagagctggatcgcctcaagggtgaggacaagatgcggcct
cagttcgagcgtatgctgctgggtatcaccaaggcttccctggccaccgaatcgttcatt
tccgcggcctccttccaggagaccacccgggtgttgaccgaagcggcggtaaccgggaaa
gaagacgatctccgtggtctcaaggagaacgtggtcgtgggtcgtctgattccggccggg
accggctatgcctatcacatggatcgccggcgccagcgtgcggatgctcgcggcgacggt
ccgaccatggacgaggtggaagcggccctgtccgaggcgctcagctcctctggccaggag
taa
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