Alloalcanivorax xenomutans: P40_18290
Help
Entry
P40_18290 CDS
T04770
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
axe
Alloalcanivorax xenomutans
Pathway
axe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
axe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
P40_18290 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
axe03021
]
P40_18290 (rpoB)
03400 DNA repair and recombination proteins [BR:
axe03400
]
P40_18290 (rpoB)
Enzymes [BR:
axe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
P40_18290 (rpoB)
Transcription machinery [BR:
axe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
P40_18290 (rpoB)
DNA repair and recombination proteins [BR:
axe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
P40_18290 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
DUF6197
Motif
Other DBs
NCBI-ProteinID:
ARB47124
LinkDB
All DBs
Position
complement(3981781..3985923)
Genome browser
AA seq
1380 aa
AA seq
DB search
MAYSFTEKKRIRKDFGKLPKVMEVPYLLAIQLDSYRKFLQQDKGAEARLDEGLEAAFRSV
FPISSYSGNAALEYAGYEFGKPVFDVKECIIRGTTYAAPLRVRIRLVIYDKESNGAIKDI
REQQVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLYSARVI
PYRGSWLDFEFDPKDLVYVRIDRRRKLPATILLRALGYTSDEVLEMFFDTNEILSEGDVY
RMRLVPERLRGETATFDILAGDEVVVERGRRVTARHIRQLEKANIEYLEIPAEYLQGRYL
AKSIIDEDTGEILVECNTELTADVLEKLNKAGVSRFETLYTNDLDHGPFIADTLRADPTR
SPLEALVEIYRMMRPGEPPTKEAAENLFKNLFFTDERYDLSGVGRMKFNRRLGREVETGP
GILYDGRYFSARTDEEGKQYHEQLGDDVSDIVDVLKTLVDIRNGNGVVDDIDHLGNRRVR
SVGEMAENQFRVGLVRVERAVKERLSLAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQF
MDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINS
LASYARTNEYGFLESPYRKVIDGKVSDEIEYLSAIEEAECVIAQVDAKMNDDGSFVEDFV
TVRHRYEFTVMERDTITHMDVSPRQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLR
ADKPLVGTGFERHVARDSGVCVVAQRGGVVDKVDASRIIVKVNDDEVAEGEAGVDIYNLT
KYTRSNQNTCINQRPLVKVGDKVAARDIMADGPSVDMGELALGQNMRVAFMPWNGYNFED
SILISERVVKEDRFTSIHIQELTCIARDTKLGAEEITADIPNVGEAALAKLDESGIVYIG
AEVEAGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVSSGVKGTVIDVQVF
TRDGVEKDERAKQIEQEALEKFRKDLKDEYRILEQDILDRLRSVMTGKKVNGGAGLKRGA
QLTSEILDELDAEKWFELRPADEDVAEQLERAHQYLEQHKKEQDERYKDKQAKISGGDDL
SHGVLKVVKVYLAIKRRIQPGDKMAGRHGNKGVISVIMPEEDMPYDDNGVPVDVVLNPLG
VPSRMNVGQILETHLGWAAKGLGERIGEMLDEQKKVAEVRDFLDQIYNRTGAGGSRESLD
EFSDDEIIELASNLRGGVPMATAVFDGAKEYEIKALLELAKRDRSGQIELWDGRTGEKFD
RKVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG
AAYTLQEMLTVKSDDVNGRTRIYKNIVDGDHRMDPGMPESFNVLLKEIRSLGINIELEND
NT seq
4143 nt
NT seq
+upstream
nt +downstream
nt
atggcatactcattcactgagaaaaagcggatccgcaaagatttcggcaagcttcccaag
gtcatggaggtcccgtacctgctggccatacagctcgattcttaccgcaaattcctacag
caggataaaggcgccgaggcgcgcttggatgaaggcttggaagctgccttccggtccgtt
ttcccgatttccagttactcgggcaacgcggccttggagtatgccggctatgagttcggc
aaaccggtctttgatgtcaaagagtgcatcattcgtggcacaacctacgccgcgccactg
cgcgtgcgcattcggttggtgatctacgacaaagagtccaatggtgcgatcaaggacatc
cgtgagcagcaggtctacatgggcgagatcccgctgatgaccgagaacggtaccttcgtg
atcaatggtaccgagcgggtcatcgtgtcccagctgcaccgctctcccggtgtgttcttt
gaccacgacaagggtaaaacccactcttccggcaagctgctgtattccgcccgggtgatt
ccctaccgtggttcctggctggacttcgaattcgatccgaaggatctggtctacgtgcgt
atcgatcgccgccgcaagctgccggcaacgattctgctgcgtgcgctgggctacacctcc
gatgaagttctggagatgttcttcgacaccaacgagatcctgagcgaaggcgatgtctat
cgcatgcgtctcgtgccggagcgtctccgtggcgaaaccgccaccttcgacatccttgcc
ggtgacgaagtggtggtggagcgtggtcgccgggtaaccgcgcgccacatccgccaattg
gagaaagccaatatcgagtacctggagattccggcggaatacctccagggccgttatctg
gccaagtccatcatcgatgaggacactggtgagattctggtcgagtgtaataccgagctg
accgccgatgtcctggaaaaactgaacaaggcgggcgttagccgctttgagacgctgtac
accaatgatctggaccatggtccgttcattgccgataccttgcgcgccgatcccacccgc
agcccgcttgaggcgctggtggaaatctatcggatgatgcgcccgggtgagccgccgacc
aaggaagcggcggaaaacctgttcaagaacctgttcttcacagacgagcgatacgacctc
tccggcgtgggccggatgaagttcaaccgccgtctcggccgtgaagtggaaaccggtcct
ggcatcctctacgacggccgctatttcagcgcccgtaccgacgaggaaggcaagcagtac
catgaacagctcggcgacgacgtgtccgatatcgtcgacgtgctcaagacgctggtggat
atccgtaacggtaatggcgtggtggacgatatcgaccacctcggcaaccgccgcgtgcgc
tccgtgggcgaaatggcggaaaaccagttccgtgttggcctggtgcgggtagagcgggcg
gtgaaagagcgcctgagcctggcggagtccgaaggactgatgccgcaggacttgatcaac
gccaagccggtagccgcggcggtcaaggagttcttcggctcttcccagttgtcgcagttc
atggaccagaacaacccgctctccgaggtcacccacaagcgccgggtgtccgcgttgggc
ccgggtggtctgacccgtgagcgtgccggcttcgaggtgcgtgacgtgcacccgacccac
tacggccgcgtatgcccgatcgagacccctgaaggtccgaacatcgggctgatcaactcc
ctggcgagctacgcgcgtaccaacgagtacggtttcctggaatctccgtaccgtaaagtg
atcgacggcaaggtgagcgacgagatcgagtacttgtccgccatcgaggaagccgagtgc
gtgatcgctcaggtggatgccaagatgaacgatgacggcagcttcgtggaagacttcgtc
accgtgcgtcaccgctacgaattcaccgtcatggagcgcgacaccattacccatatggat
gtctcgccgcgccaggtggtgtccgtggccgcgtccctgattccgttcctggagcacgat
gacgccaaccgggcactgatgggctccaacatgcaacgccaggcggtgccgacgctgcgt
gccgacaagcctctggtgggcaccggcttcgagcgtcacgtggcccgtgactccggggtt
tgcgtggtggctcagcgtggcggcgtggtcgacaaggtggatgcttcgcgcatcatcgtc
aaagtcaacgacgatgaagtggccgaaggtgaagccggtgtggacatttacaacctgacc
aaatacacccgctccaaccagaatacctgcatcaaccagcgtccgctggtgaaagtgggt
gacaaggtggcggcccgcgacatcatggcggacggtccgtccgtggacatgggtgagctg
gcgctgggtcagaacatgcgcgtcgccttcatgccctggaacggctacaacttcgaggat
tccatcctcatctccgagcgggtggtgaaggaggaccgtttcacctccatccacatccag
gagctgacctgtattgcccgtgacaccaagctgggtgcggaagaaattaccgcggatatt
cccaacgtgggtgaagcggcgctggcgaagctggacgaatccggcatcgtctacattggt
gcggaagtggaagccggcgacattctggtaggcaaggtcacgccgaagggcgagacccag
ctcactccggaagaaaagctgttgcgtgccatcttcggtgagaaagcgtccgacgtgaag
gatacctctctgcgggtttcctccggcgtcaagggcacggtcatcgatgtgcaggtgttt
actcgtgacggtgtcgagaaagacgagcgcgccaagcagatcgagcaagaggccctggaa
aaattccgtaaggacctgaaggacgagtaccggatccttgagcaggacatcctggaccgt
ctgcgttccgtgatgaccggtaagaaggtcaacggtggcgccggcctcaagcgtggtgct
caactgaccagcgaaatccttgatgagctggatgcggagaagtggtttgaactgcgcccg
gcggacgaggacgtggccgaacagctcgaacgtgcgcaccagtatctggagcagcacaag
aaagagcaggacgagcgctacaaggacaagcaggccaagatctccggcggtgacgatttg
tcccacggtgttctgaaagtggtcaaggtttacctggcaatcaagcgtcgtatccagccc
ggtgacaagatggccggtcgtcacggtaacaaaggtgtgatctccgtgatcatgcccgag
gaagatatgccgtatgacgataacggcgttccggtggatgtggtgttgaacccgctgggt
gtaccgtcgcggatgaacgtgggtcagatccttgaaacccaccttggctgggccgccaaa
ggtctgggtgagcgtatcggcgagatgctggacgagcagaagaaagtcgctgaagtgcgt
gacttcctcgatcagatctacaaccgcaccggcgctggcggcagccgcgaaagcctggac
gagttctccgatgatgaaatcatcgagctggccagcaatctgcgcggcggtgtgccgatg
gcgaccgcggtattcgacggtgccaaagagtacgaaatcaaggcgctgttggagttggcc
aagcgggaccgttccggccagatcgaactgtgggatggccgtaccggcgagaagttcgac
cgcaaggtgaccgtcggctacatgtacatgttgaaattgaaccacttggtggacgacaag
atgcacgcgcgttccaccggttcctacagcctggttacccagcagccgctgggtggtaag
gcgcagttcggtggtcagcgtttcggtgagatggaagtgtgggcgctggaagcctatggc
gccgcctacactctgcaggaaatgctcaccgtgaaatccgacgatgtgaatgggcgcacg
cgcatctacaagaacatcgtcgacggagaccaccggatggatccgggcatgccggaatcc
ttcaacgtgctgttgaaggaaatccgctccctcggtatcaacatcgagctggaaaacgac
tga
DBGET
integrated database retrieval system
