Alloalcanivorax xenomutans: P40_18645
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Entry
P40_18645 CDS
T04770
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
axe
Alloalcanivorax xenomutans
Pathway
axe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
axe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P40_18645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
axe03019
]
P40_18645
03016 Transfer RNA biogenesis [BR:
axe03016
]
P40_18645
Enzymes [BR:
axe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
P40_18645
Messenger RNA biogenesis [BR:
axe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
P40_18645
Transfer RNA biogenesis [BR:
axe03016
]
Prokaryotic type
tRNA degradation factors
P40_18645
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH_N4BP1_2nd
KH-I_KHDC4-BBP
OB_RRP5_4th
KH_2
S1_2
PCB_OB
KH_NusA_2nd
S1_RRP5
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
ARB47171
UniProt:
A0A9Q3ZIC5
LinkDB
All DBs
Position
complement(4054600..4056693)
Genome browser
AA seq
697 aa
AA seq
DB search
MFNIVRKEIQYGADTVVLETGQIARQATAAVMVTIGDTQVLVTVVGKKEADPGKGFFPLT
VNYQEKTYSTGRIPGGFLKREGRPSEKETLTCRLIDRPIRPLFPNGFMNEVQIVATVMSS
DKNQDPDIAAMIGTSAALAISGIPFNGPIGAARVGFKDGMYLLNPSYSELEDSLLNLVVA
GTEPAVLMVESEAKELSEDQMLGAVLYGHQEMQTVIQGIKAFAQEVGTPAWEWQAPAENA
ELKAAIKAKYESALAEAYTITEKQARYTKVGELRDACVAEFVTDDENSPEAGEVKSLFGK
IEKNVVREGVLSGKARIDGRALDQVRAIDCKVGVLKKTHGSALFTRGETQAIVTATLGGM
RDAQFIDALEGSRQDHFMLQYNFPPYCVGETGMIGSPKRREIGHGRLARRGVEAVVPNEK
DFPYTIRVVSEITESNGSSSMASVCGTSMALMDAGVPLSAPVAGIAMGLVKEEDGRFAVL
SDILGDEDHLGDMDFKVAGTERGVTALQMDIKIEGITEEIMEKALEQAQRGRLHILGEMA
KAISVSRDQVSDNAPTLLTMKINSEKIRDVIGKGGAVIRALTEETSCTIDIEDDGSIKIY
GETREAALEAQRRIEEITAEAEVDKIYEGEVTRVVDFGAFVRIMPGTEGLLHISQIAEER
VEKVSDYVKEGDVIRVKVLDVDQRGRIKLSMKEAKEG
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgttcaatatagtgcgcaaagagattcaatacggcgcggataccgtggtgctggaaacc
gggcaaattgcccgtcaggccaccgccgccgttatggtcaccatcggtgacacccaggtc
ctggtgaccgtggtgggcaagaaagaagcggatcccggtaaaggctttttcccgttgacc
gtgaactaccaggaaaaaacctattccaccggccgcattcccggtggtttcctcaagcgt
gaggggcgtcccagcgagaaggagaccctcacctgccgcctgatcgatcgcccgatccgg
ccgctgtttcccaacggtttcatgaacgaagtgcaaatcgttgccaccgtgatgtcctct
gacaagaaccaggatccggacatcgccgccatgatcggcacttccgccgccctggccatt
tccggtattccgttcaatggcccgatcggcgccgcccgggtgggcttcaaggacggtatg
tatctgctcaaccccagctattccgagttggaggattccctgcttaatctggtggtggcg
ggtaccgagccggccgtgctgatggtggagtccgaagccaaggagctgagcgaggaccag
atgctgggcgctgtgctttacggccaccaggaaatgcaaaccgttatccagggcatcaag
gcatttgcccaggaagtgggcaccccggcttgggagtggcaggcgccggcggagaacgcc
gaactgaaagccgcgatcaaagccaagtacgaaagcgccctggccgaggcttacaccatc
actgaaaagcaagcgcgctacaccaaagtgggtgagctgcgtgacgcttgcgtggccgag
ttcgtcactgacgacgagaacagcccggaagccggcgaagtgaaaagcctgttcggcaag
atcgagaagaacgtggtgcgtgagggtgtgttgtccggcaaagcacgtatcgacggtcgt
gccctggatcaggttcgcgcgattgactgtaaagtcggggtgctcaagaaaacccacggt
tccgctctgtttacccggggtgaaacccaggccatcgttaccgctacccttggcggcatg
cgtgatgcccagttcatcgatgccctggaaggctcccgtcaggaccacttcatgctgcag
tacaacttccccccgtactgcgtgggtgaaaccggcatgatcggctctcccaagcgccgt
gaaatcgggcacggccgtcttgcccgccgcggcgtggaagcggtggtgccgaacgagaag
gatttcccttataccatccgtgtggtctccgagatcaccgaatccaacggctcctcctcc
atggccagtgtgtgtggcacctccatggcgctgatggatgccggtgtgccgttgagcgct
ccggtggccggtatcgccatgggtctggtgaaggaagaggacggccgtttcgcggtattg
tccgacatcctgggcgacgaggaccacctgggtgacatggactttaaagtggccggcacc
gagcgcggcgtgaccgcgctgcagatggacatcaagatcgagggcatcaccgaagagatc
atggaaaaagcgctggaacaggctcagcgcggccgcctgcatatcctcggcgaaatggcc
aaggcgatctccgtgtcccgtgaccaggtttccgacaatgcgccgaccctgctcaccatg
aagatcaattcggagaaaatccgcgatgtgattggtaaaggcggcgcggtaatccgggct
ctgaccgaggaaaccagctgcaccatcgacatcgaggacgacggcagcatcaagatctac
ggggaaacccgcgaagcggcgctggaagcgcagcgccgcatcgaggagatcaccgccgag
gccgaagtggacaaaatctacgaaggcgaagtgacccgcgtggtggacttcggtgctttc
gtgcgcatcatgcccggcaccgaagggctgctgcacatttcccagatcgccgaggagcgt
gtggagaaagtctccgactacgtgaaggaaggcgacgtgatccgggtgaaagtgctggac
gtggaccagcgtggccgcatcaagctgtccatgaaggaagcgaaagaaggctga
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