Amphibacillus xylanus: AXY_00580
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Entry
AXY_00580 CDS
T02266
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
axl
Amphibacillus xylanus
Pathway
axl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
axl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AXY_00580 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
axl03400
]
AXY_00580 (mfd)
Enzymes [BR:
axl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AXY_00580 (mfd)
DNA repair and recombination proteins [BR:
axl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AXY_00580 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
IstB_IS21
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
BAM46190
UniProt:
K0IV53
LinkDB
All DBs
Position
57830..61354
Genome browser
AA seq
1174 aa
AA seq
DB search
MRGIDQYLSEHEDIDSIISGINSKLDEQLITGLSGSARSVWIAAIQRKVKKRMLLVSNQL
TQAQQLYEDLSELIDPNRVHLYPVNELLIADMAISSPELRSQRIEALTSWLAHDDHILVA
PVAALKRILPPVEYWGQFILDYQVGESIDISHHLTMMVKMGYERVDMVTNPGEFSMRGGI
IDIYPITESNPLRIELFDDEVDSIRYFDIATQRSLEKINSITLKPTSEFLLLDEDISRIA
DRLEQGLSSSLSQIQDQKTKLNLQGNIGEEIELLRTNETFQELYKYSRYFYEEPASLLDY
LGQDGLIILDEIGRIQETAEQLDQEELELIEVLLSDQKIVRDLTFSNDWRHIWGQMTQQK
LYLTVFLRHVPNTSPKNIVNLSSRPMQQFHGQMNLLQGEITRWNRADYSVIFLVPTHTRA
EKVQSILADYHIEAGLADETTTLPIKQPVIMVGNISSGFELPMQKLAVVTDQELFKAKLN
RRKQKRQKLSNAERMKSYTELKEGDFVVHVNHGVGRFVGIETLTVQGVQKDFMLIKYRGD
DRLFVPIDQIDLVQKYVGSEAKEPKLYKLGGTEWKKVKSKVKSKVEDIADELIKLYAERE
ATKGYAFSEDTLLQREFEDAFPYEETEDQLRSIEEIKQDMQRARPMDRLLCGDVGYGKTE
VAIRAAFKAIMDGKQVAFLVPTTILAQQHFETIIERFHDYPIEVRLLSRFRTQKEQKDAL
KGLKEGVVDLVVGTHRLLSKDVVYKDLGLLIVDEEQRFGVKHKERIKQIKTNVDVLTLTA
TPIPRTLHMSMLGVRDLSVIETPPANRFPIQTYVMEYNPVFIREAIERELGRGGQVFFLY
NRVENIEQKAQEIENLVEGARVAVAHGQMNETELENIMLAFLEGEYDVLVSTTIIETGVD
IPNVNTLIVDQADRMGLSQLYQLRGRVGRSNRIAYAYFTYQKNKVLSEVAEQRLQAIKEF
TELGSGFKIAMRDLSIRGAGNILGAEQHGFIDSVGFDLYSDMLAESIEKRKLKQDQVEES
IEPELSLAIEAFIPDHYISDSKQKIAMYKRFQAVDSQEGIDDIIDELTDRFGDYPKEVEN
LLTVCQIRIDAKKHYVETIKEVKNKITIIFNEKMSREVDGEKLFNYAVDFGRMIMLGTEQ
NKLKITFTFQKNILPERYQYVRSFLTALENLKRE
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgagagggattgatcaatatttatcagaacatgaagatatcgattcaataatatctgga
ataaattctaagctggatgaacaattaatcaccggtttatcaggttctgcaagaagtgtt
tggattgctgcaatccaaagaaaagtaaaaaagcgaatgttgcttgtcagtaatcaacta
acacaagctcaacagctttatgaagatttatctgaactgatagatcctaatcgagtacat
ctctatccagtcaatgaattgcttattgcagatatggcaatctcaagtcctgaactaagg
agtcagagaattgaggcattgacatcttggttagcgcatgatgatcatatcctagttgct
cccgttgctgccttaaagcgaattttaccacctgttgaatattggggtcagtttattctt
gattaccaagttggtgaaagtattgatattagtcatcatttaacgatgatggtcaaaatg
ggttatgagcgtgtcgatatggtaacaaatccaggtgagtttagtatgaggggtggaatt
attgatatctacccgattactgagtcgaacccattacggattgaattatttgatgatgaa
gttgattcaatacgttattttgatattgcaacacaacgttcactagagaaaattaatagt
attacactaaaacctacaagtgaatttcttctattggatgaagatataagtcggatcgcg
gatcgattagaacaaggtctatcaagttcgttaagtcaaattcaagaccaaaagaccaaa
ctgaatctacaaggaaatataggtgaagagatagaacttttgcggacaaatgaaacgttt
caagaactatataaatatagtcgctatttttatgaagagcctgctagtttactagactat
ttaggacaagatggtttaataattttagatgaaataggtaggattcaggaaacggctgaa
cagctagaccaggaagaacttgaattaatagaagttctattatctgaccaaaaaattgta
cgtgacttaaccttttcaaatgattggcgtcatatttggggccaaatgactcagcaaaaa
ctttatttaacggtatttttaaggcatgtaccaaacacctcaccaaagaatattgtgaac
ctttcaagtcgtccaatgcagcaattccatggacagatgaatctattacaaggtgagatt
acacgttggaatcgtgctgattactcagtgatatttttagtcccaacgcatacaagagct
gaaaaggtacaatcaatcttagctgattatcatattgaagctggattggctgatgaaaca
acgacacttccaattaaacaaccagttatcatggtaggaaatatatcgagtggttttgaa
ttaccgatgcaaaagttggcggttgtaacggatcaagaattgtttaaagctaaattgaac
agacgtaaacaaaagcgacaaaagctatccaatgctgaacgtatgaagagttataccgaa
ttaaaagaaggagacttcgttgttcacgttaaccacggtgttggtcgttttgttggtatt
gaaacattaacagtgcaaggtgttcaaaaggatttcatgttaattaaataccggggtgac
gatcgtttatttgttccaatcgatcaaattgacctcgttcaaaagtatgtaggatcagaa
gcgaaggagccgaagttatataagcttggcggtacagagtggaaaaaagtaaaaagtaaa
gtcaaatctaaagttgaagatatcgctgatgaattaatcaagctatatgctgaaagagaa
gcgacaaaaggttatgcctttagtgaagatacactacttcaaagggaatttgaagatgct
tttccatatgaagagacagaagatcagttgcgtagtattgaggaaataaagcaagacatg
caaagggctagaccaatggatcgcttgctttgtggtgatgttggttatggtaaaacagaa
gtagcgatacgggctgcctttaaggcaatcatggatggtaaacaagttgcattccttgta
ccgacgacaattttggcgcagcaacactttgagaccattattgaacggttccatgattac
ccgattgaagtacgattgctcagtcgttttaggacacaaaaggagcagaaagatgcacta
aaagggttaaaagagggtgtcgttgatcttgtcgtcgggacacaccgtttactttcaaaa
gatgttgtttataaagatttaggtttgcttattgtcgatgaagagcagcgatttggtgtt
aagcataaagagagaattaagcaaattaaaactaatgtagacgtcctgactttaacggct
acgccaattcctagaacgttacatatgtctatgcttggcgttcgtgatttatcagttatt
gaaacaccaccagcgaaccgattcccaattcagacgtatgtcatggaatataatccagtc
tttattagagaagctattgaaagagaactagggagaggtggtcaagttttcttcctatac
aatcgtgttgaaaatatagagcaaaaagcacaggaaattgagaatcttgttgaaggagct
agagttgctgttgctcacggacaaatgaatgaaactgaattagaaaatataatgctcgcg
tttttagaaggtgagtacgatgtcttagttagtactacgattatagagactggcgttgat
ataccaaatgtaaatacactgattgttgatcaggctgatcgaatgggattaagtcagctc
tatcaattacgaggtcgtgtagggcgaagtaatcgaattgcttacgcttatttcacttac
cagaaaaacaaagtactgtcagaggttgctgaacaacgattacaagctattaaagaattt
acagagcttggttctggttttaaaattgcaatgcgtgatttatctattcgcggggctgga
aatatattaggtgctgaacagcatgggtttattgattcagtaggctttgatttatattct
gatatgttagctgaatcgattgagaagagaaaactaaaacaagatcaagttgaagaatct
atcgagccggaactaagtttagcaattgaagcatttatacctgaccactatatttcagat
agtaaacagaaaattgccatgtataaacgcttccaggcggtagatagtcaagaaggtatt
gatgatataatcgatgaattaactgatcgatttggagattatcctaaagaggttgaaaac
ttgctaactgtttgtcaaatacgtatcgatgctaagaaacattatgttgagaccattaaa
gaagttaaaaataagattaccatcatatttaatgagaagatgagtcgggaagttgatgga
gagaaattatttaattatgctgttgattttggtcgaatgataatgttaggtacagagcaa
aataagttaaaaataactttcacttttcagaaaaacattcttccagagcgctatcaatat
gttcgatcatttttaactgcgttagaaaatttaaagagagaataa
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