Achromobacter xylosoxidans NBRC 15126 = ATCC 27061: AX27061_6028
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Entry
AX27061_6028 CDS
T02964
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
axn
Achromobacter xylosoxidans NBRC 15126 = ATCC 27061
Pathway
axn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
axn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AX27061_6028
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
axn03021
]
AX27061_6028
03400 DNA repair and recombination proteins [BR:
axn03400
]
AX27061_6028
Enzymes [BR:
axn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AX27061_6028
Transcription machinery [BR:
axn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AX27061_6028
DNA repair and recombination proteins [BR:
axn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AX27061_6028
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
AHC50480
LinkDB
All DBs
Position
complement(6617710..6621954)
Genome browser
AA seq
1414 aa
AA seq
DB search
MKALLDLFKQVSQDEQFDAIKIGIASPEKIRSWSYGEVRKPETINYRTFKPERDGLFCSK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTVAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAWCVIEPGMTPLKRGQIMSDDDFLAKTEEYGDDFRALM
GAEAVRELLRTIDIDREVETLRGELKATSSEAKIKKISKRLKVLEGFQKSGIKAEWMVME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIILRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRQLKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNRLEMMGLATTIKAAKKLVESQEPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEA
RTLMLASNNVLFPANGEPSIVPSQDIVLGLYYTTRERINGKGEGIFFTDVAEVQRAYDNG
EVELQSRITVRLKEHERDENGEWQPVIRRHETTVGRALLSEILPKGLPFTVLNKALKKKE
ISRLINQSFRRCGLRDTVIFADKLMQSGFRLATRGGISIAMGDMLIPSAKEGILAEASRE
VKEIDKQYSSGLVTSQERYNNVVDIWGKAGDKVGKAMMEQLATEPVINRHGEEVRQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVITEDDCGTSQGYNMKALVEGGEVIEPLRDRIL
GRVAAIDIVNPDTQETAITAGTLLDEDMVDMIDRIGVDEVKVRTPLTCETRHGLCAHCYG
RDLGRGTSVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRSALASAVETKSSGVVGF
ASTMRYVTNAKGERVAISRSGELAIFDDNGRERERHKIPYGATVLVGDGEAVKAGARLAT
WDPLTRPIVSEYGGAVRFENIEEGVTVAKQVDEVTGLSTLVVITPKTRGGKIVMRPQIKL
VNENGEDVKIAGTDHSVNISFPVGALITVRDGQQVAVGEVLARIPQESQKTRDITGGLPR
VAELFEARSPKDAGMLADVTGTVSFGKDTKGKQRLVITDLEGVSHEFLIPKEKQVLVHDG
QVVNKGEMIVDGPADPHDILRLQGIEKLATYIVDEVQDVYRLQGVKINDKHIEVIVRQML
RRVNIVDAGDTEFIPGEQVERSELLNENDRVNAEDKRPATYENVLLGITKASLSTDSFIS
AASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAYHHARKDKEALEAAERE
AARQLANPFEDSPVTVGSDADVPSSDLGSEDAAE
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcgctactcgacctctttaagcaagtctcgcaagacgagcaattcgatgccatc
aagatcggcatcgcctcgcccgagaagatccgttcgtggtcctacggcgaagttcgcaag
cccgagaccatcaactaccgcacgttcaagcccgagcgtgacggtctgttctgctccaag
atcttcggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgtggcgtgatctgcgagaagtgcggcgttgaagttaccgttgccaaggttcgccgtgag
cgcatgggccacatcgagctggccagccccgtcgcgcacatctggttcctgaagagcctg
ccgtcgcgtctgggcatggtgctcgacatgaccctgcgcgacatcgaacgcgtcctgtac
ttcgaagcctggtgcgtgatcgaacccggcatgacgccgctcaagcgcggccagatcatg
tcggatgacgatttcctggccaagaccgaggaatacggcgacgacttccgtgccctgatg
ggcgccgaagccgtgcgcgaactgctgcgcaccatcgacatcgaccgcgaagtggaaacg
ctgcgcggcgaactgaaggccaccagctcggaagccaagatcaagaagatctccaagcgc
ctgaaggtgctggaaggcttccagaaatccggcatcaaggccgagtggatggtcatggaa
gtgctgcccgtgctgccgccggacctgcgtccgctggtgccgctggacggcggccgcttc
gcgacctccgacctgaacgacctgtaccgccgcgtcatcaaccgcaacaaccgtctgaag
cgcctgctggagctgaaggcccctgaaatcatcctgcgcaacgaaaagcgcatgctgcag
gaagccgtcgactcgctgctggacaacggtcgccgcggcaaggccatgaccggcgccaac
aagcgccagctcaagtccctggccgacatgatcaagggcaagagcggtcgtttccgccag
aacctgctgggcaagcgcgtcgactactcgggccgttcggtcatcgtggtgggtccgcag
ctcaagctgcaccagtgcggcctgcccaagctgatggccctggaactgttcaagccgttc
atcttcaatcgcctggagatgatgggcctggccacgaccatcaaggccgccaagaagctg
gtggaaagccaggaaccggtggtctgggacatcctggaagaagtcatccgcgaacacccg
gtcatgctgaaccgtgcgcccacgctgcaccgtttgggcatccaggcgttcgagccggtc
ctgatcgaaggcaaggccatccagctgcacccgctggtctgcgcggcgttcaacgccgac
ttcgacggtgaccagatggccgtccacgtgccgctgtcgctggaagcccagctcgaagcg
cgcacgctgatgctggcttcgaacaacgtgctgttcccggccaacggcgaaccgtcgatc
gtgccgtcccaggacatcgtgctgggtctgtactacacgacgcgcgagcgcatcaacggc
aagggcgaaggcatcttcttcaccgacgtcgctgaagtgcaacgcgcctacgacaacggc
gaagtggagctgcaaagccgcatcaccgtgcgcctgaaggaacacgagcgtgacgagaat
ggcgaatggcagccggtgatccgccgccacgaaaccaccgtcggccgcgcgctgctgtcc
gagatcctgcccaagggcctgcccttcaccgtcctgaacaaggcgctgaagaagaaggaa
atctcgcgcctgatcaaccagtcgttccgccgctgcggcctgcgcgacacggtgatcttc
gccgacaagctgatgcagtcgggcttccgcctggccacccgcggcggtatctcgatcgcc
atgggcgacatgctgatcccgtcggccaaggaaggcatcctggccgaagccagccgtgaa
gtgaaggaaatcgacaagcagtactcgtcgggtctggtcacgtcccaggaacgctacaac
aacgtggtggacatctggggcaaggccggcgacaaggtcggcaaggcgatgatggaacag
ctggccaccgaacccgtgatcaaccgtcacggcgaggaagtgcgccaggagtcgttcaac
tccatctacatgatggctgactcgggcgcccgcggttcggccgcccagatccgccagctg
gccggcatgcgcggcctgatggccaagccggacggctcgatcatcgagacgcccattacc
gcgaacttccgtgaaggcctgaacgtgcttcagtacttcatctcgactcacggcgcgcgt
aagggtctggccgacacggcactgaagaccgcgaactcgggctacctgacccgtcgtctg
gtcgacgtgacgcaggacctggtgatcaccgaggacgattgcggcacctcgcagggctac
aacatgaaggccctggtggaaggcggtgaagtcatcgagccgctgcgcgaccgtatcctg
ggccgcgtggctgccatcgacatcgtcaacccggacacgcaggaaacggccatcaccgcc
ggcaccctgctggacgaagacatggtcgacatgatcgaccgcatcggcgtggatgaagtc
aaggtccgcacgccgctgacctgcgaaacgcgccacggcctgtgcgcgcactgctatggc
cgtgacctcggccgtggcacttcggtgaaccagggcgaagcggtcggggtcatcgccgcc
cagtccatcggtgaaccgggcacgcagctgacgatgcgtacgttccacatcggtggcgcg
gcgtcgcgttcggccctggccagcgcggtggaaaccaagtccagcggcgtggtcggcttt
gccagcaccatgcgctacgtcaccaacgccaagggcgaacgcgtcgcgatctcgcgctcg
ggcgaactggcgatcttcgacgacaacggccgcgaacgcgaacgccacaagatcccgtac
ggcgcgaccgtgctggtgggcgacggcgaggccgtgaaggccggcgcgcgcctggcgacg
tgggatccgctgacccgtccgatcgtgtcggaatacggtggcgctgtccgcttcgagaac
atcgaagaaggcgtgaccgtggccaagcaggtggacgaagtcaccggcctgtcgacgctc
gtcgtcatcacgcccaagacccgtggcggcaagatcgtcatgcgtccgcagatcaagctg
gtcaacgagaacggcgaagacgtcaagatcgccggcaccgatcactcggtgaacatctcg
ttcccggtcggcgcgctgatcactgtgcgtgatggccagcaggttgccgtgggcgaagtc
ctggcgcgtattccgcaggaatcgcaaaagacccgcgacattaccggcggtctgccgcgc
gtggccgaactgttcgaagcccgttcgcccaaggatgccggcatgctcgccgacgtcacc
ggcacggtctcgttcggcaaggacaccaagggcaagcagcgcctggtcatcaccgacctg
gaaggcgtcagccacgagttcctgattccgaaggaaaagcaggtgctggtgcacgacggc
caggtggtgaacaagggcgaaatgatcgtggacggcccggccgatccccacgacatcctg
cgcctgcagggcatcgagaagctggcgacctacatcgtcgacgaagtgcaggacgtgtac
cgtctgcagggcgtgaagatcaacgacaagcacatcgaagtgattgttcgtcagatgctg
cgccgtgtgaacatcgtcgatgcgggcgataccgagttcatcccgggcgagcaggtcgag
cgctccgagctgttgaacgagaacgaccgcgtcaacgctgaagacaagcgtccggccacc
tacgaaaacgtgctgctgggtatcaccaaggcctcgctgtcgaccgactcgttcatctcg
gccgcctcgttccaggaaaccacgcgtgtcctgaccgaagccgccatcatgggcaagcgc
gacgacctgcgtggcctgaaggaaaacgtcatcgtcggccgcctgatcccggccggtacc
ggcctggcgtaccaccatgcccgcaaggacaaggaagccctggaggccgcggaacgcgaa
gccgcccgccagctggccaacccgttcgaagactcgccggtcacggtgggctcggacgcc
gatgtcccgtcgtccgacctgggcagcgaggacgccgccgaataa
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