Achromobacter xylosoxidans NH44784-1996: NH44784_011461
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Entry
NH44784_011461 CDS
T02785
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
axo
Achromobacter xylosoxidans NH44784-1996
Pathway
axo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
axo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NH44784_011461
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
axo03019
]
NH44784_011461
03400 DNA repair and recombination proteins [BR:
axo03400
]
NH44784_011461
Enzymes [BR:
axo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NH44784_011461
Messenger RNA biogenesis [BR:
axo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NH44784_011461
DNA repair and recombination proteins [BR:
axo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NH44784_011461
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
RecQ_Zn_bind
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
CCH05123
LinkDB
All DBs
Position
1202006..1203835
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AA seq
609 aa
AA seq
DB search
MSDARALGVLQRVFGYESFRGDQQAIVQQVIDGGDALVLMPTGGGKSLCYQIPSLVREGT
GIVVSPLIALMQDQVDALTELGVRAAFLNSTQDWRVARDVEQAFLAGELDLLYVAPERLL
TDRCLQLLERGNIALFAIDEAHCVSQWGHDFRPEYLGLSMLHERWPDVPRIALTATATAE
TRNEIAQRLSLTDAHHFVSSFDRPNIRYRIVEKNEVRKQLLDMIRTEHEGESGVVYALSR
ARVEETAEFLCNQGIDAMPYHAGLSPQVRAANQARFLREDGVVMVATIAFGMGIDKPDVR
FVAHIDLPKSVEGYYQETGRAGRDGLPATAWLAYGLQDVVQQRRMIDESPGDDAYRRRLG
QQLDAMLGLCETVECRRVRLLAYFGQQISACGNCDVCLDPPQAWDGTVAAQKVLSAVYRL
WKERGQRYGAGHIIDILRGKVTDRTKQHGHETLSVFGVGEDLSDTAWRGVLRQLLAQGLL
TVDNEGYGTLALTEGSRAVLKGERQLMLRRESEKKARSGKSGGSRAKAAAIDLPAELQPV
FEALRAWRGEVAKSHGVPAYVIFHDATLREIALAQPESMDALSHISGVGARKLEAYGEEI
LQRVARPVL
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacgcgcgcgccctcggagtcctgcagcgcgttttcggttacgaatccttccgc
ggcgaccagcaagccatcgtccagcaggtcatcgacggcggcgacgcgctggtcctgatg
cccaccggcggcggcaagtcgctctgctaccagatcccgtcgctggtgcgcgaaggcacc
ggcatcgtcgtttcgcccctgatcgcgctgatgcaggaccaggtcgacgcgctgaccgaa
ctgggcgtgcgcgccgccttcctgaattcgacccaggactggcgcgtggcgcgcgacgtc
gaacaggccttcctggccggcgagctcgacctgctctacgtcgcgcccgagcgcctgctg
accgaccgctgcctgcaactgctggagcgcggcaacatcgccctgttcgccatcgacgaa
gcccactgcgtttcgcaatggggccacgacttccgccccgaatacctgggcctgtcgatg
ctgcacgagcgctggccggacgtgccgcgcatcgcgctgaccgccaccgccaccgccgaa
acccgcaacgagatcgcccagcgcctgtcgctgaccgacgcgcaccacttcgtctccagt
ttcgaccgccccaacatccgctaccgcatcgtcgaaaagaacgaggtgcgcaagcagttg
ctggacatgatccgcaccgaacacgaaggcgaatccggcgtggtctacgcgctgtcgcgg
gcgcgcgtcgaggaaaccgccgaattcctctgcaaccagggcatcgacgccatgccgtac
cacgccgggctcagcccgcaggtgcgcgccgccaaccaggcgcgcttcctgcgcgaggac
ggcgtggtcatggtcgccaccatcgccttcggcatgggcatcgacaagcccgacgtgcgc
ttcgtggcccacatcgacctgcccaaatcggtcgagggctattaccaggaaaccggccgc
gccggccgcgacggcctgcccgccaccgcctggctggcctacggcctgcaggacgtggtg
cagcagcgccgcatgatcgatgaatccccgggcgacgacgcctaccgccgccgcctcggc
cagcagctggacgcgatgctgggcctgtgcgaaaccgtggaatgccgccgcgtgcgcctg
ctggcgtatttcggccagcagatcagcgcctgcggcaattgcgacgtctgtctcgatccg
ccccaggcctgggacggcaccgtggcggcgcagaaggtgctgtcggccgtgtaccggctg
tggaaggaacgcggccagcgctatggcgccggtcacatcatcgacatcctgcgcggcaag
gtcaccgaccgcaccaaacagcacggccacgaaaccctgagcgtgttcggcgtgggcgaa
gacctgagcgacacggcctggcgcggcgtgctgcgccagttgctggcgcagggcctgctc
accgtcgacaacgaaggctacggcacgctggccctgaccgaaggcagccgcgccgtgctc
aagggcgagcgccagctgatgctgcggcgcgaatccgaaaagaaggcccgctccggcaag
agcggcggcagccgcgccaaggccgcggcgatcgacctgcccgccgaactgcaaccggta
ttcgaggcgctgcgcgcctggcgcggcgaagtggccaagagccacggcgtgccggcctac
gtgatcttccacgatgccacgctgcgcgagatcgcgctggcccagcccgagtcgatggac
gcgctcagccacatcagcggggtcggcgcgcgcaagctggaagcctacggcgaggaaatc
ctgcaacgggtggcgcggccggtgctgtag
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