Achromobacter xylosoxidans NCTC10807: ERS451415_01439
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Entry
ERS451415_01439 CDS
T04522
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
axx
Achromobacter xylosoxidans NCTC10807
Pathway
axx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
axx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ERS451415_01439 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
axx03019
]
ERS451415_01439 (rne)
03009 Ribosome biogenesis [BR:
axx03009
]
ERS451415_01439 (rne)
Enzymes [BR:
axx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ERS451415_01439 (rne)
Messenger RNA biogenesis [BR:
axx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ERS451415_01439 (rne)
Ribosome biogenesis [BR:
axx03009
]
Prokaryotic type
rRNA processing factors
ERS451415_01439 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Zn_Tnp_IS1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
CKH04121
LinkDB
All DBs
Position
1:complement(1574042..1577116)
Genome browser
AA seq
1024 aa
AA seq
DB search
MKRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNY
GEDRHGFLPFKEVARSFFKEGVDVRTARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRDTMEQLELPQGMSIIARTAGIGRNVEELQ
WDLSYLLQLWTAIDGAARDNSAPILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQAT
AFMSVVMPDNVQRVKRYRDDIPLFSRFQIEHQIETAYSRTVQLPSGGAIVIDHTEALVSV
DVNSARSTRGADIEETALRTNSEAADEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQR
LRDALHFDRARVQMGKISRFGLMELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSALH
VLRLLQEEAMKENTAAVHAQVPVDVATYLLNEKRADITKMEARLKVNLVLIPNKHLETPH
HHIERLRHDDPRLEEVKTSFELVEAPATDAPWQPRESEIKARPEALVKGITPSQPAPVST
PAPAPAPAAAPAQSGGGLLKRLFGWLTGNSEPAKTAPAAAQEETGAKRAASPARGKGRGA
HDGQERRGERHGSDRNRNRRGESRTEGAEGGEGGRHHIRGNRRPEGERGERQERGERNNR
NERGERDQAVQAAQASNRPDVAPEAAGDDAGAGRNRRRGRGRNRREEGQADTPMSEQESM
VAALAQSVATALPEAKQPADAQAEPAEAVELAAEGVPATEGAEAGADPERKRRRRRSRRG
RRSADEAGVAGSDEQLEDGAEDDAGEQAENLTASAPAAAAPVAAAAPAADVPATPVQAPA
QQAEAVQAEAAPAPVQAEQAPAAAIEPQAAQPTQTAAPEATAPVAVDPASQVSEPAAPVA
TPVQAAVVEPVVEPVVTTAPAAPAEPEAAAAPVVTPAPAAAPAQAAPTSAQPIVVPATAP
SAKAQTLHEVVNAAGLQWVETDPERHAQTQLRIAAAHTPVRLGRERKPVAPVSNEPLVQV
ETRH
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatgctgttcaatgcgacgcaccaggaagaattacgcgtcgctatcgtcgat
gggcaaaaactcatcgacctcgacatcgagactgccggccgcgaacaacgcaaaggcaac
atctacaaaggtgtcatcacccggatcgaacccggccttgaagcttgcttcgtcaactac
ggcgaagaccgccatggctttcttcccttcaaggaagtggcccgcagcttcttcaaggaa
ggcgtcgacgtccgcaccgcccgcatccaggacgccctgcgtgaaggtcaggaactgatc
gtccaggtcgaaaaggaagagcgcggcaacaagggcgccgccctgaccacgttcatctcg
ctggccggccgctacctggtcctgatgcccaacaacccccgtggcggtggcgtttcgcgc
cgcgtcgagggcgaggaccgccaggaactgcgcgacacgatggagcagctcgagctgccc
cagggcatgagcatcatcgcccgcaccgccggcatcggccgcaacgtcgaagaactgcaa
tgggacttgtcgtacctgttgcagctctggaccgccatcgacggcgccgcgcgcgacaac
tccgcgcccatcctgatctacctggaatccagcctggtcatccgcgccatccgcgattac
ttctcgcccgagatcggcgagatcctgatcgacacggacgagatcgccgaccaggccacc
gcgttcatgagcgtggtgatgccggacaacgtccagcgcgtgaagcgctaccgcgacgac
atcccgctgttctcgcgcttccagatcgaacaccagatcgaaacggcctactcgcgcacg
gtgcagctgccctcgggcggcgccatcgtcatcgaccacaccgaagcgctggtgtccgtg
gacgtcaactcggcccgctcgacccgcggcgccgacatcgaggaaaccgccctgcggacc
aactcggaagccgccgacgaagtggcccgccagctgcgcttgcgcgacctgggcggcctg
atcgtcatcgacttcatcgacatggaagacagcaagaaccagcgcgccgtcgaacagcgc
ctgcgtgacgccctccatttcgaccgcgcccgcgtccagatgggcaagatctcgcgcttc
ggcctgatggaactgtcgcgccagcgcctgcgtccggccctgaacgaaggctcgcacatc
acctgcccgcgctgcaacggcaccggcgtgatccgcgacgccgaatccagcgccctgcac
gtcctgcgcctgctgcaggaagaagccatgaaggaaaacaccgcggcggtccacgcccag
gtgccggtcgacgtggcgacctacctgctgaacgaaaagcgcgccgacatcaccaagatg
gaagcccgcctgaaggtcaacctggtgctgatccccaacaagcacctggaaacgccgcat
caccacatcgagcgcctgcgccacgacgatccgcgcctggaagaagtgaagaccagcttc
gaactggtcgaggcgccggccacggacgctccgtggcagccgcgcgaaagcgagatcaag
gcccgccccgaagcgctggtcaagggcatcacgccctcgcagccggcgcccgtgtcgacc
cccgccccggcgcccgctcccgcggccgccccggcgcaatcgggcggcggcctgctcaag
cgcctgttcggctggctgaccggcaattccgagcccgccaagaccgcgcccgccgctgcc
caggaagagaccggcgccaagcgcgccgcctcgccggcacgtggcaagggccgtggcgcc
catgacggccaggaacgccgcggcgaacgccatggttccgaccgcaatcgcaaccgtcgc
ggtgaatcgcgcacggaaggcgccgagggcggcgaaggcggccgtcatcacatccgtggc
aaccgccggcccgaaggcgagcgcggcgaacgccaggaacgcggcgagcgcaacaatcgc
aacgagcgtggcgaacgcgaccaggcagtgcaggccgcacaggcctcgaaccgtcccgat
gtcgcgccggaagccgctggcgacgacgccggcgccggccgcaaccgccgccgtggccgt
ggccgcaatcgccgcgaggaaggccaggccgatacgccgatgagcgaacaggaaagcatg
gtcgccgcgctggcccagtcggtcgcgaccgccctgcctgaagccaagcagcctgccgat
gcccaggccgaaccggcggaagccgtcgaactggccgccgagggcgtgcccgccaccgaa
ggcgccgaagccggcgccgatccggaacgcaagcgtcgccgccgccgcagccgtcgtggc
cgccgcagcgcggacgaggccggcgtggctggcagcgacgagcagctggaagacggcgcc
gaagacgacgccggcgaacaggccgagaacctgaccgcctccgcgccggcagcagccgcc
ccggtggcagcggcagcccctgcggccgacgtccccgcgacgccggttcaggctcccgcg
caacaagccgaagccgtccaggctgaagccgcgccggcgccggtccaggccgaacaggcg
cccgccgccgcgatcgagccgcaggccgcgcagcccacccagactgccgcgcccgaggcg
accgctccggtggccgtcgaccccgccagccaggtttccgagccggccgcgcccgtcgcg
acgccggtgcaagccgctgtggtggaaccggtggtcgaacccgtcgtgacgacggcgccc
gccgccccggccgaacccgaagccgctgcggccccggtggtcacgcccgccccggccgcc
gcgccggcgcaggccgcgcccaccagcgcccagcccatcgtggtgccggcgacggctccc
tcggccaaggcccagaccctgcatgaagtggtcaacgccgccggcctgcagtgggtggag
accgatcccgaacgccacgcgcagacgcaactgcgcatcgccgcggcgcacacgccggtc
cgcctgggccgcgagcgcaagccggtggcgccggtctcgaacgaacccctggttcaggtc
gaaacccgccactga
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