Achromobacter xylosoxidans NCTC10807: ERS451415_02630
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Entry
ERS451415_02630 CDS
T04522
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
axx
Achromobacter xylosoxidans NCTC10807
Brite
KEGG Orthology (KO) [BR:
axx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
axx03009
]
ERS451415_02630 (rlmD)
Enzymes [BR:
axx01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
ERS451415_02630 (rlmD)
Ribosome biogenesis [BR:
axx03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
ERS451415_02630 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_25
Methyltransf_31
Methyltr_RsmB-F
RrnaAD
Methyltransf_32
PCMT
Methyltransf_11
TRM5-TYW2_MTfase
Methyltransf_23
DUF5594
Motif
Other DBs
NCBI-ProteinID:
CKH36540
LinkDB
All DBs
Position
1:2875984..2877489
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AA seq
501 aa
AA seq
DB search
MSDVLSIESLDLEARGIARRDGKVVFVEGALPGERVTATTVRRKPSYEIARVDQVMRPSS
QRVAPRCPHFGVCGGCAMQHLEPSTQVAIKQRSLEDTFWHVGKLRPARILAPLHGPTWGY
RYRARLSVRVVPKKGGVLVGFHERKSSYVADMRECHVLPRHVSDLLMPLRAMIASMSAPD
RLPQVEVSLGDGVTALVLRHLLPLTDHDIAVLRAFADKHDVQWWLQPKGPDTVHPLVPEH
RDALTYTMPEFGLRMPYRPTDFTQVNHAINRAMVSRALQLLEVQPTDRVADLFCGLGNFT
LPLATQGREAVGVEGSKALTDRAHEAAARHGLGERTSFATLNLFEVDAEWLRGLGFFDRM
LIDPPREGAQAVAQALSQLKAEERPRRIVYVSCNPATLARDAAIMVHEGGYLLKSAGVIN
MFPHTGHVESIAVFESLDAEGVREVQERARQRALQQAAEAAAAEAEKEAAAAEKAASKQA
ATEAYHARVAAEGEAPAQSQA
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacgttttgagtatcgaatccctggacctggaagcccggggtatcgcccgccgc
gatggcaaggtcgtgttcgtggaaggcgccttgcccggcgagcgggtcacggcgaccacc
gtgcgccgcaagccgtcctatgaaatcgcgcgggtcgaccaggtcatgcgcccgtcgtcg
cagcgcgtcgcgccgcgctgcccgcatttcggcgtctgtggcggctgtgccatgcagcat
ctcgaaccgtccacgcaggtggcgatcaagcagcggtcgctcgaagacaccttctggcac
gtcggcaagctgcgtccggcccgcatcctggcgccgctgcatggcccgacctggggctac
cgctaccgcgcccgcctgtcggtgcgcgtggtgcccaagaagggcggggtgctggtgggt
tttcacgagcgcaagagcagctacgtggccgacatgcgcgaatgccatgtgctgccgcgc
cacgtcagcgacctgctgatgccgctgcgcgccatgatcgcgtcgatgtccgcgcccgac
cgcctgccgcaggtggaagtgtcgctgggcgacggcgtgaccgcgctggtgctgcgccac
ctgctgccgctgaccgaccacgacatcgccgtgctgcgcgccttcgccgacaagcacgat
gtgcaatggtggctgcagcccaagggcccggacacggtgcatccgctggtgcccgagcat
cgcgacgcgctgacctacaccatgcccgagttcggcctgcgcatgccgtaccggccgacc
gacttcacccaggtcaaccacgccatcaaccgcgcgatggtgtcgcgcgcgctgcaattg
ctggaagtgcagccgaccgaccgcgtcgccgacctgttctgtggcctgggcaacttcacg
ctgccgctggccacccagggccgcgaggccgtgggcgtggaaggcagcaaggcgctgacc
gaccgcgcccatgaggccgccgcgcgccacgggctgggcgagcgcaccagtttcgccacc
ctcaacctgttcgaggtggacgccgaatggctgcgcggcctgggcttcttcgaccgcatg
ctgatcgatccgccgcgcgaaggcgcgcaggccgtggcgcaggcgctctcgcaactgaag
gccgaggaacgcccgcgccgcatcgtctacgtgtcctgtaatcccgccacgctggcgcgc
gacgccgccatcatggtgcacgagggcggttacctgctcaagagcgccggtgtcatcaac
atgttcccgcacaccgggcacgtggagtccattgccgtgttcgaatcgctggatgccgag
ggcgtgcgcgaagtgcaggagcgcgcccgccagcgcgccttgcagcaggctgccgaggcg
gcggccgccgaagcggaaaaggaagcagcggctgccgagaaggccgcgtccaagcaggcg
gccaccgaggcctaccacgcccgcgtcgcggccgaaggcgaggcgccggcgcaaagccag
gcgtga
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