Achromobacter xylosoxidans A8: AXYL_02006
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Entry
AXYL_02006 CDS
T01341
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
axy
Achromobacter xylosoxidans A8
Brite
KEGG Orthology (KO) [BR:
axy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
axy03019
]
AXYL_02006 (hrpA)
Enzymes [BR:
axy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AXYL_02006 (hrpA)
Messenger RNA biogenesis [BR:
axy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AXYL_02006 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
T2SSE
NACHT
nSTAND3
AAA_25
AAA_16
HA2_N
SLFN-g3_helicase
ResIII
SRP54
AAA_30
TsaE
PhoH
Motif
Other DBs
NCBI-ProteinID:
ADP15335
UniProt:
E3HGJ9
LinkDB
All DBs
Position
2129154..2133071
Genome browser
AA seq
1305 aa
AA seq
DB search
MPESSSPRAPKSADAAAAEARNARRAPRPERPIPVVTYPEDLPVSARRQEIARAIARHQV
VIVSGETGSGKTTQLPKICLELGRGRQKMIGHTQPRRLAATSVAKRIAEELNTPMGEVVG
YQVRFNDRTGPNASIKLMTDGILLAESQRDPLLRRYDTIIIDEAHERSLNIDFLLGYLKQ
LLPRRPDLKIIITSATIDAERFARHFAASEDKLAPVIEVSGRLYPVEVRYRPVREELAED
EAAPAKPGRDRERMSGDEERDLIDAIVDAVDECARHGPGDVLVFLPGEREIRESAEALRK
RHPAGTEVLPLYARLSQAEQEQIFHPRTNARRIVLATNVAETSLTVPGIRFVVDSGLARI
KRYSWRNKVEQLRIEPISRASANQRAGRCGRVGPGVCIRLYDELDFNNRAPFTDPEVLRS
SLASVILRMKSLKLDDIEQFPFVEAPPGRAVADGYHLLQELGAIELASAADDDADASRTG
ASFVLTQTGHELAKLPVDPRIGRMILAAREHQCLSEMLIIASALSVQDARDRPMQEREAA
EAAHAKFADDKSEFISFLKLWRWYGEQVQHKASQRKLVALLRQNFLSPIRLREWHDVHTQ
LAALVGEQGWRLNQIEATYEQLHMALLSGLLGNIGFKSDEGGHYQGAREIRFHIHPGSRL
VKKAGRWIVAAELVETTRLYARCVARIDPVWLEKVGAHLIRKNWSDPRWEKKAGQVVANE
RATLYGLTIYTGRRIHYGRVNPTHARELFIRQALVPGEIDTRLAFVAHNRKLIAGIEKLE
HQTRRPDILVDDELIHAFYDRQLPADISQTASLEKWVSGLDKAAAAKLMLTRDELMRHEA
AGVTTDVFPKKVEWQGVSMALDYHFEPGSPRDGVTLSVPLFALNQIDPARCEWLVPGMLK
EKVHLLLKSLPQKLRRHCVPLPDYAAGFYERWFERQADPQQGLVDAIIADMWDQVQVRPA
AGDFKLETLPAHLFMNFRVVDEHGRMLAAGRNLAQLRAEFGKQAQATFQQLAASDTQVAQ
ALAHENLTSWSFGPLPEIMEIKRRGQSVIGYPALVDRGAHCDLDVFDDPDEARKHHRAGL
LKLFRLGLREQVKFLEKNLTDLTKISMLYMTLGTQEELRDQIIDCALGQACLAEPWPVNE
QQFEARRAEGKGRLGLLAQEVARLAGAVLTEWAAVQRKLPQAKPHASAYADLQAQLGALM
PKWFIRDTPYAQLAHFPRYLKAVLARIDKLRADPGRDAKLVAEMAPLLTQYQRARSALKG
APDPRLDEFRWLLEELRVALFAQELRTPMPVSVKRLMKSWELLKR
NT seq
3918 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaatcctccagcccgcgtgcgcccaagagcgcggacgcggcggccgcggaagcg
cggaatgcgcgccgagcgccgcgtcccgagcggcccatccccgtggtgacctaccccgaa
gacctgcccgtcagcgcgcggcgccaggagatcgcgcgcgccatcgctcgccatcaggtg
gtgatcgtcagcggcgagaccggctcgggcaagaccacccaactgcccaagatctgcctg
gaactgggccgcggccgccagaagatgatcggccacacccagccgcgccgactggccgcg
acctcggtggccaagcgcatcgccgaagaactgaacacgcccatgggcgaggtggtgggc
taccaggtgcgcttcaacgaccgcaccggccccaacgcgtccatcaagctgatgacggac
ggcatcctgctggccgagtcgcagcgcgatccgctcctgcgccgctacgacaccatcatc
atcgacgaggcgcacgaacgcagcctgaacatcgatttcctgctgggctacctgaagcag
ctgctgccgcgccgcccggacctgaagatcatcatcacctcggccaccatcgacgccgag
cgcttcgcgcggcacttcgccgcgtccgaggacaagctggcgcccgtcatcgaggtgtcc
ggccgcttgtacccggtcgaggtccgctaccgccccgtgcgcgaggaactggcggaagac
gaggccgctccggccaagcctggccgcgaccgcgagcgcatgtcgggcgacgaagagcgc
gacctgatcgacgccatcgtcgacgcggtggacgaatgcgcgcgccatggcccgggcgat
gtgctggtgttcctgccgggcgaacgcgagattcgcgaatcggccgaggcgctgcgcaag
cgccatccggccggcaccgaagtgctgccgctgtacgcgcgcctgtcgcaggccgagcag
gagcagatcttccatccacgcaccaatgcgcggcgcatcgtgctggccaccaacgtggcg
gaaacctcgctgacggtgccgggcatccgcttcgtggtcgacagcgggctggcgcgcatc
aagcgctattcctggcgcaacaaggtcgagcagctgcgcatcgagccgatcagccgcgcc
tcggccaaccagcgcgccggccgctgcggccgggtcggcccgggcgtctgcatccggctc
tacgacgagctggacttcaacaaccgcgcgccgttcacggacccggaagtgctgcgctcg
tcgctggcctcggtcatcctgcggatgaagtcgctgaagctggacgatatcgagcagttc
cccttcgtcgaggcgcctccgggccgggcggtggccgacggctaccatctgctgcaggaa
ctgggtgcgatcgagctggcgtcggctgcggacgacgacgccgacgcctcccgcaccggc
gcgtccttcgtgttgacccagacgggccacgaactggccaagctgccggtcgatccgcgc
atcggccgcatgatcctggcggcgcgcgagcaccagtgcctgtccgaaatgctgatcatc
gcctcggccctgtcggtgcaggacgcgcgtgaccggcccatgcaggaacgcgaggcggcc
gaggcggcgcacgccaagttcgccgacgacaagtccgaattcatttccttcctgaagctg
tggcgctggtacggcgagcaggtccagcacaaggcctcgcagcgcaagctggtggccttg
ctgcgccagaacttcttgtcgccgatccggctgcgcgaatggcatgacgtgcatacccag
ctggccgccctggtgggcgagcagggctggcggctgaaccagatcgaggccacctacgag
cagttgcacatggcgctgctgtcgggcctcttgggcaatatcggcttcaagagcgacgaa
ggcggccactaccagggcgcgcgcgagatccgcttccatatccatcccggctcgcggctg
gtgaagaaggcggggcgctggatcgtcgcggccgaactggtcgaaaccacgcgcctgtac
gcgcgctgcgtggcgcggatcgatccggtgtggctggaaaaggtcggcgcgcacctgatc
cgcaagaactggtccgacccgcgctgggaaaagaaggcggggcaggtggtggccaacgaa
cgggccacgctctacgggctgaccatctacacgggcaggcggatccactacggccgggtc
aatccgacccacgcccgcgagctgttcatccgccaggccctggtgcctggcgagatcgac
acgcggctggcgttcgtggcgcacaaccgcaagctgatcgcgggcatcgagaagctggaa
caccaaacccgccgccccgatatcctggtcgacgacgagctgatccacgccttctacgac
cgccaactgccggccgacatctcgcagacggcctcgctggaaaagtgggtgtccgggctg
gacaaggcggccgccgccaagctgatgctgacacgcgacgagctgatgcggcacgaagct
gctggcgtcacgaccgatgtcttccccaagaaggtggaatggcagggcgtgtcgatggcg
ctggactaccacttcgaaccgggttcgccgcgcgatggcgtgaccctgtcggtgccgctg
ttcgcgctcaaccagatcgatccggcgcgctgcgaatggctggtgcccggcatgctcaag
gagaaggtgcatctgctcctgaagtcgctgccgcagaagctgcgccgccattgcgtgccg
ctgccggactatgcggcgggcttctacgagcgctggttcgagcgccaggccgatccgcag
caggggctggtggacgcgatcatcgccgatatgtgggaccaggtgcaggtccgcccggcg
gcgggcgatttcaagctggagactttgccggcccacctgttcatgaatttccgggtggtg
gacgagcatggccgcatgctggcggccgggcgcaacctggcgcagctgcgcgccgaattc
ggcaagcaggcgcaggctacattccagcaattggcggccagcgacacccaggtcgcccag
gcgctggcgcatgagaacctgacctcctggtccttcggtcccttgccggagatcatggag
atcaagcggcgcgggcagtcggtgatcggctatccggcgctggtggaccgcggcgcgcat
tgcgacctggacgtgttcgacgatcccgacgaagcgcgcaagcatcatcgggcgggcttg
ctcaagctgttccggctgggcttgcgcgagcaggtcaagttcctggaaaagaacctcacc
gacctgaccaagatcagcatgctctacatgacgctggggacgcaggaagagctgcgcgac
cagatcatcgattgcgcgctggggcaggcttgcctggccgaaccctggccggtgaacgag
cagcagttcgaggcccgacgggccgagggcaagggccggctgggcctcctggcgcaggaa
gtggcgcggctggcgggggcggtgctgacggagtgggcggcggtgcagcgcaagctgccg
caggccaagccgcatgcgtcggcctatgcggacttgcaggcgcagttgggggcgctgatg
cccaagtggttcatccgcgatacgccttatgcgcagcttgcgcattttccgcggtatctg
aaggcggttctggcgcgtatcgacaagctgcgggcggatccgggcagggatgccaagctg
gtggcggagatggcgccgttgctgacccagtatcagcgggcgcggtcggcgttgaagggg
gcgccggatccgcggctggatgagttccggtggctgctggaggagttgcgggtggcgttg
tttgctcaggagttgaggacgcctatgccagtttctgttaagcggttgatgaaaagctgg
gagttgcttaagcgttga
DBGET
integrated database retrieval system
