Achromobacter xylosoxidans A8: AXYL_06470
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Entry
AXYL_06470 CDS
T01341
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
axy
Achromobacter xylosoxidans A8
Pathway
axy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
axy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AXYL_06470 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
axy03021
]
AXYL_06470 (rpoB)
03400 DNA repair and recombination proteins [BR:
axy03400
]
AXYL_06470 (rpoB)
Enzymes [BR:
axy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AXYL_06470 (rpoB)
Transcription machinery [BR:
axy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AXYL_06470 (rpoB)
DNA repair and recombination proteins [BR:
axy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AXYL_06470 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
BSH_YknX
Motif
Other DBs
NCBI-ProteinID:
ADP19763
UniProt:
E3HT19
LinkDB
All DBs
Position
complement(6947074..6951186)
Genome browser
AA seq
1370 aa
AA seq
DB search
MPYSYTEKKRIRKSFAKREDVQNVPFLLATQLQSYLTFLQADTAPSDRVADGLQAAFSSI
FPIVSHNGMARLEFVSYVLGEPVFDVKECQQRGLTYASPLRAKVRLVLLDREVSKPTVKE
VKEQEVYMGEIPLMTGTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARV
IPYRGSWLDFEFDPKDVLFFRVDRRRKMPVTILCKAIGMTPESILANFFDFDNFELKSEG
AMMEFVPERWKGEMARFDISDRDGKVIVEKDKRINAKHLRDLAAGGIQRISVPEDFLYGR
VLAKNIVDPDTGEVIANANDEITESVLGALRASNVYDIQALYTNDLDRGPYISQTLRTDE
TADQMAARVAIYRMMRPGEPPTEEAVEALFQRLFYSEETYDLSRVGRMKVNSRLGRGEDI
TGPMTLTNEDILETIKVLVELRNGRGQIDDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAETENLMPHDLINSKPISAAIKEFFGSSQLSQFMDQTNPLSEITHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSMALYARLNEYGFLETPYRKI
IDGKVSEQIDYLSAIEESHYVIAQANAALDEEGRFVDDLVACREAGETMLTAPANVHYMD
VAPSQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPVVGTGIERTVAVDSGT
TVQALRGGLVDHVDAERVVIRVNDEENVAGEVGVDIYNLIKYTRSNQNTNINQRPIVKRG
DKVAKGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISEKVVADDRYTSVHIE
ELTVVARDTKLGPEEITRDISNLAETQLNRLDDSGITYIGAEVSADDVLVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMTGTVIDVQVFTREGIVRDKRAQSIIDDELR
RYRQDLNDQLRIVENDQFDRIEKMLVNKTVNGGPRKLAKGATITKAYLADLDRWQWFDIR
LADEPHAVVLEQAKESLEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMIKVYLAVKRRLQ
PGDKMAGRHGNKGVVSRITPVEDMPHMADGTPADIVLNPLGVPSRMNVGQVLEVHLGWAA
KGVGHRIADMLRDERTAQVKNIRAYLDKVYNTTGTGARIDELTDEEVMEMAQNLKNGVPF
ATPVFDGATEEEITTMLELAYPDEVAKRMALTPSRTQAWLYDGRTGEQFERPVTVGYMHY
LKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT
VKSDDITGRTKVYENIVKGDHVIDAGMPESFNVLVKEIRSLALDMDLERN
NT seq
4113 nt
NT seq
+upstream
nt +downstream
nt
atgccttactcgtacaccgaaaaaaagcgcatccgcaaaagcttcgccaagcgtgaagac
gttcaaaacgttcccttcctgttggcgacacagcttcaatcctacctaactttcctgcag
gcggataccgccccgtccgatcgcgtagccgacggtttgcaggcggcgttctcgtcgatt
ttcccgatcgttagtcacaacggtatggcgcgcttggagttcgtgagctatgtgctcggc
gaaccggtgttcgatgtcaaggaatgtcagcaacgtggcctgacctatgcctcgcccctg
cgagccaaggtccgcctggtgctgcttgaccgcgaagtcagcaagcccaccgtgaaggaa
gtgaaggaacaggaagtctacatgggcgaaattccgctcatgacgggcacgggttccttc
gtcatcaacggcaccgagcgtgtcatcgtctcgcagctgcaccgctcgcctggcgtgttc
ttcgaacacgaccgcggcaagacccacagctccggcaagctcttgttctcggcccgcgtg
attccttaccgcggttcgtggctggacttcgaattcgacccgaaggacgtcctgttcttc
cgcgtcgaccgccgccgcaagatgcctgtcacgatcctgtgcaaggccatcggcatgacg
ccggaatccatcctggccaacttcttcgacttcgacaacttcgaattgaagagcgaaggc
gcgatgatggaattcgtgcccgagcgttggaagggcgaaatggcccgtttcgacatctcg
gaccgcgacggcaaggtcattgtcgaaaaagacaagcgcatcaacgccaagcatctgcgc
gacctggctgccggcggcatccagcgcatctccgtgccggaagacttcctgtacggccgc
gtgctggccaagaacatcgtcgacccggacaccggtgaagtcatcgccaacgcgaacgac
gagatcacggaaagcgtgctgggcgccctgcgcgcctccaacgtctacgacatccaggcc
ctctacacgaacgacctggatcgcggtccgtacatctcgcagacgctgcgcaccgacgaa
accgccgaccagatggccgctcgcgttgccatctaccgcatgatgcgtcccggcgagccg
cccaccgaagaagcggtggaagcgctgttccaacgtctgttctacagcgaagaaacgtac
gatctgtcgcgcgtcggccgcatgaaggtcaacagccgtctgggccgtggtgaagacatc
accggcccgatgacgctgaccaacgaagacatccttgaaaccatcaaggtgctggtcgaa
ttgcgtaacggccgtggccagatcgacgacatcgatcacctgggcaaccgccgcgtgcgt
tgcgtcggcgaactggccgagaaccagttccgcgccggcctggtgcgcgtcgagcgcgcc
gtcaaggaacgtctgggccaggccgagacggaaaacctgatgccgcacgacctgatcaac
tccaagccgatttcggccgccatcaaggagttcttcggttcgagccagctgtcgcagttc
atggaccagaccaacccgctgtcggaaatcacgcacaagcgtcgcgtttccgcactgggc
ccgggcggtctgacccgcgagcgcgccggctttgaagtccgcgacgtgcacccgacccac
tatggccgcgtctgcccgatcgaaacgccggaaggcccgaacatcggcctgatcaactcc
atggcgctgtacgctcgcctgaacgagtacggcttcctggaaacgccttaccgcaagatc
atcgacggcaaggtcagcgagcagatcgactacctgtcggccatcgaagaaagccactac
gtcatcgcgcaggccaacgccgcgctcgacgaagagggccgtttcgtggacgacctggtg
gcttgccgcgaagccggcgaaaccatgctgaccgctccggccaacgtgcactacatggac
gttgccccgtcgcagatcgtgtcggttgccgcctcgctgattccgttcctggagcacgac
gacgcgaaccgcgcgctgatgggcgccaacatgcaacgtcaggccgtgccttgcctgcgt
ccggaaaagccggtcgtgggtacgggtatcgagcgtaccgtggccgttgactcgggcacg
accgtgcaagccctgcgtggcggcctggtcgaccacgtcgacgccgagcgtgtcgtgatc
cgcgtgaacgatgaagaaaacgtcgccggcgaagtcggtgtcgatatctacaacctgatc
aagtacacccgttccaaccagaacacgaacatcaaccagcgtcctatcgtcaagcgtggc
gacaaggttgccaagggtgacgtgctggccgacggcgcatcgaccgacctgggcgaactc
gccctgggtcagaacatgctgatcgcgttcatgccgtggaacggctacaacttcgaagac
tcgatcctgatctccgaaaaggttgtggccgatgaccgctacacctcggtccacatcgag
gaactgacggtcgtcgcccgcgacaccaagctgggtccggaagaaatcacgcgcgacatc
agcaacctggccgagacgcaactgaaccgcctggacgattcgggcatcacgtacatcggc
gccgaagtcagcgccgacgacgtgctggtcggcaaggtcacgcccaagggcgagacccag
ctgacgccggaagaaaagctgctgcgcgccatcttcggcgaaaaggcgtccgacgttaag
gacacctcgctgcgcgtgccctcgggcatgaccggcaccgtgatcgacgtgcaagtgttc
acgcgcgaaggcatcgtgcgcgacaagcgcgcccagtccatcatcgacgatgaactgcgc
cgctatcgccaggacctgaacgaccagctgcgcatcgttgagaacgaccagtttgaccgt
atcgaaaagatgctggtcaacaagaccgtcaacggcggcccgcgcaagctggccaagggc
gccacgatcaccaaggcatacctggctgatctggaccgctggcagtggttcgacatccgc
ctggccgacgagccgcacgccgtcgtgctggagcaggccaaggaatcgctggagcagaag
cgccaccagttcgacctggccttcgaagaaaagcgcaagaagctgacgcaaggcgacgag
ctgcccccgggcgtgctgaagatgatcaaggtctacctggccgtgaagcgtcgtctgcaa
cctggcgacaagatggcaggccgtcacggcaacaagggcgtggtctcgcgtatcaccccg
gtggaagacatgccgcacatggctgacggcacgccggccgacatcgttctgaacccgctg
ggcgtgccctcgcggatgaacgtcggccaggtgctggaagtgcacttgggctgggctgcc
aagggcgtgggccatcgcatcgccgacatgctgcgcgacgaacgcaccgcacaggtcaag
aacatccgtgcctacctggacaaggtctacaacacgaccggcaccggcgcccgcatcgac
gagctgaccgacgaagaagtcatggaaatggcccagaacctcaagaacggcgtgccgttc
gcgacgcccgtcttcgacggcgcgaccgaagaggaaatcaccacgatgctggagctggcc
tatccggacgaagtcgccaagcgcatggcgctgacgccgtcgcgtacgcaggcatggctg
tacgacggtcgtacgggcgagcagttcgagcgtcccgtcacggtcggctacatgcactac
ctgaagctgcaccacttggtcgacgacaagatgcacgcgcgttcgaccggcccgtactcg
ctggttacccagcagcctctgggcggcaaggcgcagttcggcggccagcgtttcggggaa
atggaagtgtgggcgctggaagcatacggcgccgcctacaccctgcaggaaatgctgacg
gtgaagtccgacgacatcaccggccgtaccaaggtatacgaaaacatcgtcaagggcgac
cacgtcatcgacgccggcatgccggaatcgttcaacgtgctggtcaaggaaatccgctcg
ttggccctggacatggatttggagcgtaactaa
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integrated database retrieval system
