Ilumatobacter coccineus: YM304_08010
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Entry
YM304_08010 CDS
T02501
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aym
Ilumatobacter coccineus
Pathway
aym03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aym00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
YM304_08010 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aym03021
]
YM304_08010 (rpoC)
03400 DNA repair and recombination proteins [BR:
aym03400
]
YM304_08010 (rpoC)
Enzymes [BR:
aym01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
YM304_08010 (rpoC)
Transcription machinery [BR:
aym03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
YM304_08010 (rpoC)
DNA repair and recombination proteins [BR:
aym03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
YM304_08010 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
BAN01115
UniProt:
A0A6C7E7G7
LinkDB
All DBs
Position
901091..905047
Genome browser
AA seq
1318 aa
AA seq
DB search
MLDVNMFDQLKIGLATADQIRNWSHGEVKKPETINYRTLRPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRSKVRRDRMGHIELAAPAVHIWYLRGTRSWLAYLLAG
IEPKEELKAKMLEKVIYFAAHLVSWVDEEGRHEATASLEAEYLEERDVVQKELDLELDER
FKQLEADVAEAEKADAKAADLKKLQKEADKEIEAIRERYEMELDLISRTWDEFKSLHARK
IIEDELLWREMRDKYGEYFEGGTGAEAIKQLIDRIDFDEEEVKLREAIDPGDSGRKPLSA
QRKQKAIKRLKIVTSFNRRDENDRRINDPKAMILDAVPVIPPELRPMVQLDGGRFATSDL
NDLYRRVINRNNRLERLLNLGAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLK
SLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPTLKLHQCGLPKLMALELFKPFVMKRL
VDLELAQNIKTAKRMVERRRPQVWDVLEDVIKEHPVMLNRAPTLHRLGIQAFEPVLVEGK
ALQIHPLVCTAFNADFDGDQMAIHVPLSAEAQAEARVLMLSANNILSPASGRPITVPSQD
MIIGGYYLTEAIDDAKGAGRVFRHLWEVLRAYDEGELDLHASIEIRPPRVADDHPMSDEE
RERANAPFTTTPGRALFEEALPDDYPAKFGHIDFLVTKKEMGVMVEHLSDNYPKTVIAQS
LDNIKNLCYRFASQSGITVSIDDVRTPKAKRAMLDDYEAQAEKVENQFKRGIITDGERRQ
QEVRIWTDATADVQAAMEAEFKAQQFNPIDMMVGSGARGNMTQMRQIAGMRGLVANPRGD
MIPRPIKSNFREGLETLEYFIATPGARKGLVDTALRTADSGYLTRRLVDVAQELIVREED
CGSTLGVWIESVGEDTANKRAYLETKLYGRALLNDTELANPMEDGRTMLPRNTIVGDEEM
AALRDDPNIERLRVRSVLTCDAELGVCAMCYGRSLATGQMIELGEAVGVIAAQSIGEPGT
QLTMRTFHTGGVAGKDIAGGLPRVVELFEARTPKGSARLAKATGVLHLREDEGKGIPVVV
TDDAGEEHETLLPLGARPIVTDGQEVKAGDPLVDGPFDPKEIMEIKGIRETQLYLVEEVQ
RVYRDQGVSIHDKHIELIVRQMTRRIGVQEPGDSGFLPGERVDSKRFRDTNRRMVEESGR
PAEGRPELMGITKASLATESWLSAASFQETTRVLTEAAIDGRGDDLIGLKENIILGKLIP
AGTGMSKYREFGIEAPDYEPMTYYSSEGEEDPAAFLAGLHGSYQGDKAAAGASSEPIG
NT seq
3957 nt
NT seq
+upstream
nt +downstream
nt
atgctcgacgtcaacatgttcgaccagctcaagatcgggctggccaccgcggatcagatc
cgcaactggtcacacggtgaagtgaagaagccggaaaccatcaactaccgcacgctgcgc
cccgagaaggacggcctgttctgcgagaagatcttcggaccgactcgcgactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgcgagcgctgcggtgtc
gaagtcacccgcagcaaggtccgccgtgaccgcatgggccacatcgagctcgcggctccg
gccgtgcacatctggtacctccgcggtacccgttcgtggctcgcctacctcctcgccggc
atcgagccgaaggaagaactcaaggcgaagatgctcgagaaggtcatctacttcgcggcg
cacctcgtcagctgggtcgacgaagaaggccgccacgaagcgaccgccagcctcgaagcc
gagtacctcgaagagcgcgacgtcgtccagaaggaactcgacctcgaactcgacgagcgc
ttcaagcagctcgaagccgacgtggccgaagccgagaaggccgacgcgaaggccgccgat
ctcaagaagctccagaaggaagccgacaaggagatcgaagcgatccgcgagcgctacgag
atggagctcgacctcatctcgcgtacgtgggacgagttcaagagcctgcacgctcgcaag
atcatcgaagacgaactgctgtggcgcgagatgcgcgacaagtacggcgagtacttcgaa
ggtggcaccggcgccgaagcgatcaagcagctcatcgaccgcatcgacttcgacgaagaa
gaagtcaagctgcgcgaagccatcgacccgggcgattcgggccgcaagccgctcagcgcc
cagcgcaagcagaaggcgatcaagcgcctcaagatcgtcacgtcgttcaaccgccgtgac
gagaacgaccgtcgcatcaacgacccgaaggccatgatcctcgacgccgttccggtcatc
ccgccggaactgcgcccgatggtccagctcgacggtggacgcttcgccacctccgacctc
aacgacctctaccgtcgtgtgatcaaccgcaacaaccgactcgagcgtctgctcaacctc
ggtgcgccggagatcatcgtcaacaacgaaaagcgcatgctgcaggaggccgtcgacgca
ctgttcgacaacggtcgccgtggtcgccccgtgaccgggccgggcaaccgtccgctcaag
tcactgtccgacatgctcaagggcaagcagggtcgcttccgtcagaacctcctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtggtcggcccgacgctcaagctgcaccag
tgcggcctgccgaagctgatggcgctcgagctgttcaagccgttcgtcatgaagcgcctc
gtcgacctcgaactcgcgcagaacatcaagaccgcgaagcgcatggtcgaacgtcgtcgt
ccgcaggtctgggacgtgctcgaagacgtcatcaaggaacacccggtcatgctgaaccgt
gcgcccacgctgcaccgtctcggcatccaggcattcgaaccggtgctggtcgagggcaag
gcgctccagatccacccgctcgtctgcacggcgttcaacgctgacttcgacggtgaccag
atggccatccacgtgccgctgtcggccgaggctcaggccgaggcccgcgtgctgatgctg
tcggcgaacaacatcttgtcgccggcgtcgggtcgtccgatcaccgtgccgtcgcaggac
atgatcatcggtggctactacctcaccgaagcgatcgacgacgccaagggagcgggccgc
gtgttccgtcacctgtgggaagtcctgcgggcctacgacgaaggtgaactcgatctgcac
gcgtcgatcgagatccgaccgccgcgtgtcgccgacgaccacccgatgagcgacgaagag
cgcgagcgcgcgaacgctccgttcacgaccacccccggtcgtgcgctgttcgaagaggcc
ctgcccgacgactacccggccaagttcggccacatcgacttcctcgtcacgaagaaggag
atgggtgtcatggtcgagcacctctccgacaactacccgaagacggtcatcgcgcagtcg
ctcgacaacatcaagaacctctgctaccggttcgcgagccagtcgggcatcaccgtctcg
atcgacgacgtccgtacgccgaaggcgaagcgggccatgctcgacgactacgaggcgcaa
gccgagaaggtcgagaaccagttcaagcgaggcatcatcaccgacggcgagcgtcgtcag
caggaggtccgcatctggaccgacgcaaccgctgacgtgcaggccgcaatggaagccgag
ttcaaggcccagcagttcaacccgatcgacatgatggtcggctcgggtgcccgaggaaac
atgacgcagatgcgtcagatcgccggcatgcgtggcctcgtggccaaccctcgtggtgac
atgatccctcgtccgatcaagtcgaacttccgtgaaggtctcgaaaccctcgagtacttc
atcgccacgccgggtgctcgtaagggcctcgtcgacaccgctctccgtaccgctgactcc
ggttacctgacccgccgtctcgtcgacgtcgcccaggagctcatcgtccgcgaagaagac
tgcggctcgaccctcggcgtgtggatcgagagcgtcggcgaagacaccgccaacaagcgt
gcgtacctcgagacgaagctctacggccgtgcgttgctcaacgacaccgaactcgccaac
ccgatggaagacggccgcacgatgctgccgcgcaacaccatcgtcggcgacgaggagatg
gcggcgctgcgcgacgacccgaacatcgagcgcttgcgcgttcgttcggtgctgacgtgc
gacgccgaactcggcgtgtgcgccatgtgctacggccgctcgctggccaccggtcagatg
atcgagctgggtgaggccgtcggcgtcatcgcagcacagtcgatcggtgagcccggtacc
cagctcacgatgcgtaccttccacaccggtggtgtggccggtaaggacatcgccggcggt
ctgccccgcgtcgtcgaactcttcgaagctcgtaccccgaagggctcggcccgtctggcc
aaggccaccggcgtgctgcaccttcgcgaggacgaaggcaagggcattcccgttgtcgtc
accgacgacgccggcgaagagcacgagacgctcctcccgctgggcgcacgcccgatcgtc
accgacggtcaagaggtcaaggccggcgatccgctggtcgacggccccttcgacccgaag
gagatcatggagatcaagggcatccgcgagacccagctctacttggtggaggaagtccag
cgtgtgtaccgagaccagggtgtgtcgatccacgacaagcacatcgagctgatcgtgcgt
cagatgacgcgtcgcatcggcgtgcaggagcccggcgattccggcttcctgcccggcgag
cgggtcgactcgaagcgcttccgcgacaccaaccgtcgcatggtcgaggagtcgggtcgt
cccgcagagggccgtccggagctgatgggtatcacgaaagcgtcgctcgcgaccgagtcg
tggctgtcggctgcatcgttccaggagaccacccgtgtgctcaccgaggcggccatcgac
ggccgtggcgacgacctcatcggtctcaaggagaacatcatcctcggcaagctgatcccg
gccggtacgggcatgtcgaagtaccgcgagttcggtatcgaggcccccgactacgagccg
atgacgtactacagctccgagggcgaagaagaccccgctgcgttcctggccggcctgcac
ggctcgtaccagggcgacaaggcggcggccggagcttcctccgagccgatcggctga
DBGET
integrated database retrieval system
