Ilumatobacter coccineus: YM304_20250
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Entry
YM304_20250 CDS
T02501
Symbol
rnd
Name
(GenBank) putative ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
aym
Ilumatobacter coccineus
Brite
KEGG Orthology (KO) [BR:
aym00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
aym03016
]
YM304_20250 (rnd)
Enzymes [BR:
aym01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
YM304_20250 (rnd)
Transfer RNA biogenesis [BR:
aym03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
YM304_20250 (rnd)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
BAN02339
UniProt:
A0A6C7EAW0
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All DBs
Position
2244495..2245676
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AA seq
393 aa
AA seq
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MGEQAPHEIDYRWIDDQDEFEAIIDELVEVPRYALDTEFHRERTYYPKLALVQVAWQRAD
GSGQESVLIDPLAVDVAGFARLFSTEALCVIHAAQQDLDVLTHAVGSVPARMFDTQLAGG
FVGYGTPSLVSLLQGEIGITPAKGDRLTDWLRRPLTEAQKQYAAADVEYLLEVHDLLLAK
LEERGRVTWAEAACEELRTKPVSGAAPEDAWLKLKDSRSMRPKGRAVAQAVAAWRERRAM
RTDIPVRQVLPDLAILGISQRAPSSLKELKQARGVDDRHTRGGIADEILEAVKAGREAEP
PEAPRSSDDLDRNLRPAITLISAWVGQLARDEKIDNVLLATRADIVALLRDDDDARLASG
WRAEMLGDGIKQLVSGKAGLTFDPEGRLKLMPV
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaacaggccccgcacgagatcgactatcgctggatcgacgaccaggacgagttc
gaggcgatcatcgacgagctcgtcgaggtgcctcgctacgccctcgacaccgagttccac
cgtgagcgcacgtactacccgaagctcgcgctcgtacaggtcgcctggcagcgcgccgac
ggttcgggccaggagtcggtgctgatcgacccgctcgcggtcgatgtcgccgggttcgcc
cggttgttctcgaccgaggcgttgtgtgtgatccatgcggcgcagcaagacctcgacgtg
ttgacccacgcggtgggctcggttcccgctcggatgttcgacacacagctggccggcggg
ttcgtcggctacggcacaccgtcgctggtgtcgctgctgcagggcgagatcggcatcacg
ccggccaagggcgaccgattgaccgactggctccgtcgcccgttgaccgaagcgcagaag
cagtacgccgcggccgacgtcgagtacctgctcgaagtgcacgatctgctgctggccaag
ctcgaggagcgcggccgcgtcacgtgggccgaggcggcgtgcgaggagctccgaaccaaa
ccggtcagcggtgcagctcccgaagacgcctggctgaagctcaaggactcgcggtcgatg
cggcccaagggccgtgcggtcgctcaggccgtcgccgcgtggcgcgaacgacgcgcgatg
cgaaccgacattccggtgcggcaggtgctgcccgacttggcgatcctcggcatctcgcag
cgtgcgccgtcgtcgctcaaggagctgaagcaggcgcgcggtgtcgacgatcgacacact
cgcggtggcatcgccgacgagatcctcgaagcggtcaaggccggccgtgaggccgagcca
cccgaggcgcctcggtcatccgacgatctcgatcgcaatctccgtccggcgatcacgctc
atctctgcgtgggtcggccagctcgctcgcgacgagaagatcgacaacgttctgctcgcc
acgcgtgccgacatcgtggcgctgctgcgtgacgacgacgatgcgcgcctcgcgtccggc
tggcgcgccgagatgctcggcgacggcatcaagcaactggtgagcggcaaggccgggttg
acgttcgacccggagggccgactcaagctgatgccggtctga
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