Ilumatobacter coccineus: YM304_22790
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Entry
YM304_22790 CDS
T02501
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
aym
Ilumatobacter coccineus
Pathway
aym02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
aym00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
YM304_22790 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aym03021
]
YM304_22790 (rpoD)
Transcription machinery [BR:
aym03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
YM304_22790 (rpoD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
ACT
Motif
Other DBs
NCBI-ProteinID:
BAN02593
UniProt:
A0A6C7E8A9
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All DBs
Position
2541456..2542757
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AA seq
433 aa
AA seq
DB search
MEPPDAPHDATNDASSGAPFLGVDDGEWGKLLKKGQASGEVHADQVSHVLRHVELTENVL
TDVQTALADQGISIDDAVEHDHDDDTPGLHRSVIDEPADPDDADERLLSRRRKRRTKKQA
PRGEGGTADAVRMYLREIGQVDLLTIDDERRLAQLIEEGQVAAGKIDEANEAGKPVEGVE
GRMLVRAVNRGERAKSELTQANLRLVVSIAKRYSGRGMQLLDLVQEGNLGLMRAVEKFDY
TKGFKFSTYATWWIRQAITRSIADQARTIRIPVHMVEHMNRVTRAKRTMHQELEREPSIE
ELAERVQLEPDRVRELLRISQDPLSLDSPVGEEDESNLGDFIQDESADSPADAAAKVMLS
DAVGEVLNELSEREQEIVRLRFGLDGGQAKTLEEVGKAFGVTRERIRQIEAKTLAKLRHP
QRSQRLREFLEVE
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atggaacctcctgacgcaccacatgacgcaaccaacgatgcgtcgtcaggcgcgccattc
ctcggcgtcgacgacggtgagtggggcaagctcctcaagaaggggcaggcctcgggcgaa
gtgcacgccgatcaggtgagccacgtgctgcgtcacgtcgagctgaccgagaacgtgctc
accgatgtgcagacggcgctcgccgatcagggcatctcgatcgacgacgcggtcgagcac
gaccacgacgacgacacgccggggcttcatcgctcggtcatcgacgagccggccgatccc
gacgacgccgacgagcgactgctcagtcgacgccgcaaacgccgcacgaagaagcaggct
cctcgcggcgaaggcggaaccgccgacgcagttcgcatgtatctgcgtgagatcggccag
gtcgatctgctcaccatcgacgacgagcgccgcttggcgcagctcatcgaagaaggccag
gtcgcagccggcaagatcgacgaggcgaacgaggccggcaagccggtcgagggcgtcgag
ggacgcatgctcgtgcgggcggtcaaccgcggcgagcgcgccaagagcgagttgacgcaa
gccaacctgcggctcgtggtgtcgatcgccaagcggtactcggggcgcggtatgcaactc
ctcgatctcgtgcaggagggcaacctcggtctgatgcgggcggtcgagaagttcgattac
accaaggggttcaagttctcgacgtacgcaacctggtggatccgtcaggcgatcacccgc
tcgatcgccgatcaggcccgcaccattcgcatcccggtgcacatggtcgagcacatgaac
cgggtcacacgggcgaagcgcaccatgcaccaggagctcgagcgtgagccgtcgatcgaa
gagctcgccgagcgcgtgcaactcgaacccgatcgggtccgcgagttgctgcgcatctca
caggatccgttgtcgctcgactcgccggtcggggaggaagacgaatcgaacctgggtgat
ttcatccaagacgagtctgccgacagccccgccgacgccgccgccaaggtcatgctgtcg
gatgcggtcggcgaggtgctcaacgaactgtcggagcgggagcaggagatcgtccggctc
cggttcgggctcgacggcgggcaggccaagaccctcgaagaggtcggcaaggcgttcggc
gtgacacgagagcgcatccgccagatcgaggcgaagaccttggcgaagctgcgtcatccg
cagcgcagtcaacgcctccgcgagtttctcgaagtcgagtag
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