Ilumatobacter coccineus: YM304_33120
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Entry
YM304_33120 CDS
T02501
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aym
Ilumatobacter coccineus
Pathway
aym03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aym00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
YM304_33120 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aym03400
]
YM304_33120 (mfd)
Enzymes [BR:
aym01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
YM304_33120 (mfd)
DNA repair and recombination proteins [BR:
aym03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
YM304_33120 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
AAA_30
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BAN03626
UniProt:
A0A6C7EI22
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All DBs
Position
3683797..3687270
Genome browser
AA seq
1157 aa
AA seq
DB search
MTDVADDLIAGEVDSAERIAPLVSLAPLLRDEPGLTRALADPGARLAVVEVARPISIAAL
ARLSNRRPLVVACPTGTMAAQLHDDLQQFVAPDELALFPGWETLPFERVSPNVETMGQRL
DVLWRLRDPERCPKVIVAGVRSLLQKLGPGAMSVEPIVIRPQTEIDPDILVKTLVRFGYR
REELVEHRGEFARRGAIIDVYPARASAPIRIDLWGDEVDRLTRFGVNDQRSVADLDEALI
FPARELIPDERVQERARTLMASEPWGREQWERLAEGAHFDGMESWLPWLVDDDVLLTDVL
PDDAKVVLLEPRRMRDRAADLIAEEDDLARTLASTWARDPDKTFPRLHADPDVLLASAGS
FWSIDSTPESPDTPLVEAMGWGPVVGDGTGLTDRLRDLIADGYRVVVAADGEGSARRLHS
MLLDQGLDFALRVGPKADLTVDIPVGGSIIVAPLHRGATLPNAKVAIVAESDLTGRRRAH
RQARPRKRSETASTFEDLKAGDYVVHQQHGVGKYDGMVKRAIGGVERDYLLLSYKGGDKL
YIPSDQIDTIRQYVGGEAPKLHKLGGSDFAKTKSRVKSEVRQIAQELVLLYQQRVTAEGH
QFAMDTPWQAEMEDAFPFVETPDQRTAIDEIKADMERGFPMDRLVCGDVGFGKTEIAIRA
AFKAIQDGKQVAVLAPTTLLATQHGNTFADRFAGFPIRVEVLSRFLTAAQAKKVVNDVKS
GEVDCVIGTHRLLAADIHFKDLGLLVVDEEQRFGVQHKEKMKKLKTNVDVLTLSATPIPR
SLEMSLVGIRDLSLLQTPPAERQPILTYVGEYDERVAIEAIRRELLREGQVFWVHNRVRS
IDSAASRLRELVPEARIAIAHGQMDEGSLENVVQDFWDGQYDVLVCTTIIESGIDMPAVN
TLVVERSDLLGLGQMHQLRGRVGRSGQRAYAYLFHPRDKTLSEEAYERLRTIGEATELGS
GFKIAMRDLEIRGAGSLLGESQSGHIAAVGYDLYCQMVTEAVSEMKGEPLPNAPTEIKLD
VPTDSFLPDDYVKKEESRLEAYRRLADVTSQAQVDDIRAEWEDRYGPLPAPAESLLQVGY
LRAECHRLGVTDLQITSSDARIQPIELKMSATLRLRRLSKGAKYKEDLHQLVVPLPRGKD
AATFLVGFFRDLVPDDD
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgttgctgacgacctgatcgccggcgaggtggactccgccgagcgcatcgct
ccgctggtctcgctcgctcccctgctccgcgacgagccgggcctcacgcgtgccctcgcc
gaccctggggcgcgcctcgccgtcgtcgaagtggcccggccgatctcgatcgccgcgctc
gctcggctctccaaccggcgaccgctggtggtcgcctgtccgacgggcacgatggccgcg
cagctccacgacgacctccagcagttcgtcgccccggacgagctcgcgttgttccccggg
tgggagacgctgccgttcgagcgggtgagccccaacgtcgaaaccatgggccaacgcctc
gacgtgttgtggcggctgcgcgacccggagcggtgcccgaaggtgatcgtggccggcgtt
cggtcgctgctccagaagctcggtcccggcgcgatgagcgtcgagccgatcgtcatccga
ccgcagaccgagatcgaccccgacatcctcgtcaagacgctggtgcgattcggctatcga
cgcgaagagctcgtcgagcaccgcggcgagttcgctcgtcgcggcgcgatcatcgacgtg
tacccggctcgcgccagcgccccgatccgcatcgatctgtggggtgacgaggtcgatcgc
ctcacccggttcggggtgaacgaccaacggtcggtcgccgacctcgacgaagccctgatc
ttccccgcccgcgaactgatccccgacgagcgcgtgcaggagcgcgctcgcacgctcatg
gcctccgagccgtgggggcgcgagcagtgggagcggctcgcggagggtgcgcacttcgac
ggcatggagtcgtggctgccctggctcgtcgacgacgacgtgctgctcaccgacgtgctg
cccgacgacgccaaggtggtgctgctcgaaccgcggcgcatgcgcgaccgagccgccgac
ctcatcgccgaggaagacgatctggcgcgcaccctcgcatcgacgtgggctcgcgatccc
gacaagacgttcccccgcctgcacgccgaccccgacgtgctcctggcgagcgccggttcg
ttctggtcgatcgactccacgcccgaatctcccgacacgccgctcgtcgaggcgatgggc
tgggggcccgtcgtcggtgacggcaccggcctcaccgaccggctccgcgatctgatcgcc
gacgggtatcgcgtcgtggtcgcagccgacggcgaaggatcggctcgacgtctgcactcg
atgctgctcgaccaggggctcgacttcgcgctgcgcgtcggtccgaaggccgacctcacg
gtcgacatcccggtgggcggcagcatcatcgtcgccccgctgcatcgcggtgccacgctc
cccaacgcgaaggtcgcgatcgtcgccgaatccgatctgaccggtcggcgtcgcgcacac
cgtcaggctcggccgcgcaagcgcagcgagaccgcgagcaccttcgaagacctcaaggcc
ggcgactacgtcgtccaccagcagcacggtgtcggcaagtacgacggcatggtcaagcga
gcgatcggtggcgtcgaacgggactacctgctgttgtcgtacaagggcggcgacaagctc
tacattccgtccgatcagatcgacacgatccgccagtacgtcggcggagaggccccgaag
ctccacaagctcggcggttccgacttcgccaagaccaagagccgggtcaagtcggaggtc
cgccagatcgcgcaggaactcgtgctgctctaccagcagcgcgtcaccgccgaaggccac
cagttcgccatggacacgccgtggcaggccgagatggaagatgcgttcccgttcgtcgag
actcccgaccagcgcacggcgatcgacgagatcaaggccgacatggagcgcgggttcccg
atggatcgcctcgtgtgcggtgacgtcggtttcggcaagaccgagatcgcgatccgcgcc
gcgttcaaggcgatccaagacggcaagcaggtcgccgtgctcgctcccaccacactgctg
gcgacgcagcacggcaacacgttcgccgaccgattcgccgggttcccgatccgcgtcgag
gtcctctcgcgcttcctcaccgccgcgcaggcgaagaaggtcgtcaacgacgtcaaatcc
ggtgaggtcgactgcgtcatcggcacacaccgcctgctcgccgccgacatccacttcaag
gatctcgggttgctcgtcgtcgacgaagagcagcggttcggcgtgcagcacaaggagaag
atgaagaagctgaagacgaacgtcgacgtcctcacgctctccgccacgcccattccgcgc
tcgctcgagatgtcgctcgtcggcatccgcgacctctcgctcctgcagacaccgcccgcc
gagcgtcaaccgatcctcacctatgtgggcgagtacgacgagcgggtcgcgatcgaagcg
atccgtcgcgaactcctgcgcgaaggccaggtgttctgggtgcacaaccgggtccggtcg
atcgacagcgcggccagtcggctgcgcgaactcgtgcccgaagcacgcatcgccatcgcc
cacgggcagatggacgaaggctcgctcgagaacgtcgtccaggacttctgggacggtcag
tacgacgtgttggtctgcaccacgatcatcgagtcgggcatcgacatgccggcggtcaac
acgctcgtcgtcgagcgctccgatctgctcggtctcggccagatgcaccaactccgtggc
cgtgtcgggcgctcgggccaacgcgcctacgcctacctcttccacccgcgcgacaaaacg
ctgagcgaggaggcgtacgagcggctccgcacgatcggcgaggcgaccgaactcggctcg
ggcttcaagatcgcgatgcgtgacctcgagatccgcggcgccggcagcctgctcggcgag
tcgcagtctggtcacatcgccgccgtgggctacgacctctactgccagatggtcaccgaa
gccgtgagcgagatgaagggcgagccgctcccgaacgctcccaccgagatcaagctcgac
gtgcccaccgactcgttcctgcccgacgactacgtcaagaaggaggagtcgcggctcgag
gcgtaccgccggctcgccgacgtcacgtcgcaggcccaggtcgacgacatccgagccgag
tgggaagaccgctacggcccgcttccggcacccgccgagtcgctgctccaggtcggctac
ctccgcgccgagtgccaccgcctcggtgtcaccgacctgcagatcacgtcgtccgacgct
cgcatccagccgatcgaactcaagatgagcgcaaccctgcggctgcgtcgcctgtcgaag
ggcgcgaagtacaaagaagacctgcaccagttggtcgtcccgctcccccgtggcaaggat
gcagcgaccttcctggtcggattcttccgcgatctcgtccccgacgacgactga
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integrated database retrieval system
