Aster yellows witches'-broom phytoplasma AYWB: AYWB_098
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Entry
AYWB_098 CDS
T00314
Name
(GenBank) Zn-dependent hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ayw
Aster yellows witches'-broom phytoplasma AYWB
Pathway
ayw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ayw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AYWB_098
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ayw03019
]
AYWB_098
Messenger RNA biogenesis [BR:
ayw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AYWB_098
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
Lactamase_B_2
Lactamase_B_6
RMMBL
TRM
Motif
Other DBs
NCBI-ProteinID:
ABC65215
UniProt:
Q2NK28
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All DBs
Position
114437..116161
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AA seq
574 aa
AA seq
DB search
MNNFQITNWRFQVNDIKFFALGGLGESGKNFYVLQINDSYFLLDAGLKYPNTNLYGIDSM
IADYYKLQDIKDKIKGVFLSSAFETNLGALPYLMKDFDIPVYASYFTMQVLKAHFQSHKI
NYRNFNLQIVKSDERLIFDDVAVAFFATSQLIPETLGMVFQTKRGSIIYSGDLKLLHSKN
KFFQTNFTRLAQLAQPKVLTFLPSCRGAFITSSHNNDASSFEHKLNNYFSNHLLKSEGII
VIPSLMPDLLKIQSVVNLACRLNFKITFLGRKSEKIIDVALKKGFLKVPSFNLVELKTLE
DSKKHPKLVVFVLGKHFEPLFHLQKMCQKTDNLIHLTTQDLVLLMSKEMSGIAKMQSQTL
DLLSRHNIPARVLVKDLDACSDDYEKTLKLMLNFLKPQYIIPVMGEYRHQYQVQKIAQSL
GFKLNQIFLLENGSIWHCDSQKDAFAESNTGVLTEILIDGTPVIDGQDFIMKDRELLAAD
GVVIVVANVNAKHKKIVGAPQLVSKGFLADSETSHIFPKLKAIFDEKSEIFLKKKYLKWN
DFKKNIRESLVKFLFKETKKRPIVIPIFISVKSE
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgaataattttcaaattacaaactggaggttccaagtgaatgacattaaattttttgct
ttaggagggctgggcgaaagtggaaaaaatttttacgtattgcaaattaacgactcttat
tttttacttgatgctggactaaaatatcctaatactaatctttatggaatcgattctatg
attgctgattattacaaattacaggatatcaaagataagattaaaggtgtttttttatca
tcggcttttgaaaccaatttgggtgccttaccttatttgatgaaagattttgatatccct
gtttatgcttcttattttacgatgcaagtcctaaaagcgcattttcaaagtcataaaatt
aattatcgcaatttcaatctacaaatcgtgaaaagtgacgaaagacttatttttgatgat
gtggcagtggccttttttgctacatcgcagttgattcctgaaacattggggatggttttt
caaactaaaagaggtagcatcatttattctggcgacctgaaattattgcattctaaaaat
aaattttttcaaactaattttacaagattagctcaattagcacaacccaaagtgcttacc
tttttgccttcttgtcgtggggcttttatcacatcttctcataataacgatgcatcgagt
tttgagcacaaattgaataactattttagcaatcacttgctgaaatctgaaggcattatt
gttattccttctttgatgcctgatttgttaaaaattcaatctgtagtgaatttggcatgt
agacttaattttaaaataacttttttaggtagaaaaagtgaaaaaattattgatgttgct
ttgaaaaaaggttttttaaaagtgccttctttcaatttagtggaattaaaaacactagaa
gactccaaaaaacatccaaaattagttgtctttgtgctaggtaagcattttgagcctttg
tttcatttgcaaaaaatgtgtcaaaaaacagataatttaattcatttaacgacccaagat
ttagtgttgttgatgtccaaagaaatgtcaggaattgccaaaatgcaatctcaaacccta
gatcttttgtcgcgtcacaacattccagcccgtgttttggtcaaagatttagacgcttgt
tccgatgattatgaaaaaacccttaaattgatgcttaattttttaaaacctcaatacatt
attcctgttatgggtgaatatcgtcatcaatatcaagtgcaaaaaattgctcaaagttta
ggattcaaactcaaccaaattttcttgttagaaaatggcagcatttggcattgcgactca
caaaaagatgcctttgctgaatctaatactggagttcttacagaaattttaattgatggc
actcccgttattgatgggcaagattttattatgaaagaccgtgaacttttagcagcggat
ggagttgtaattgttgttgccaatgttaatgctaaacacaaaaaaatagtaggagcacca
caattagtaagtaaaggttttttggcagattctgaaactagtcatatttttcctaagtta
aaagctatttttgatgaaaaaagtgaaatttttttgaaaaaaaagtatcttaaatggaat
gatttcaaaaaaaatattagagaatcattagttaaatttttattcaaagaaactaaaaaa
agacctattgttattcctatttttatcagtgttaaaagtgaataa
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