Aster yellows witches'-broom phytoplasma AYWB: AYWB_318
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Entry
AYWB_318 CDS
T00314
Symbol
srmB
Name
(GenBank) superfamily II DNA and RNA helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
ayw
Aster yellows witches'-broom phytoplasma AYWB
Brite
KEGG Orthology (KO) [BR:
ayw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ayw03019
]
AYWB_318 (srmB)
03009 Ribosome biogenesis [BR:
ayw03009
]
AYWB_318 (srmB)
Enzymes [BR:
ayw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AYWB_318 (srmB)
Messenger RNA biogenesis [BR:
ayw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AYWB_318 (srmB)
Ribosome biogenesis [BR:
ayw03009
]
Prokaryotic type
rRNA helicases
AYWB_318 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
PhoH
DUF4159
Motif
Other DBs
NCBI-ProteinID:
ABC65435
UniProt:
Q2NJF8
LinkDB
All DBs
Position
complement(338683..340056)
Genome browser
AA seq
457 aa
AA seq
DB search
MQNYIQKKILQLQFQTLTPIQKEVFSQFEKPGNLVGIAPTGTGKTHAYLLPILSKIDFQK
TFTQAIILVPTNDLVFQVWEMFKQIEKTNFTKILYRGMDKQKAITTFEKKQPPLIIATPD
KLLEYAFKLKKINLKYVSYLVLDEADMMFDELFLNSLDPLISHLKAKILLFSATFNEQLK
PFINRYFGKSTFIDVYNQSNLNRTFYLLETTTSKIQTLIHLTKVLNPYLALIFVNEKKEQ
ELVFQTLQNDSLKLLNYNSDLSVKQRKKSLKAIHKLKYQYVIASDLAARGIDFDASCVIH
YNLPSHLEFFFHRSGRTSRMGKKGEIIVLYDPQEIKEKEKINKLIQLGITFHKSSLSKGG
FIRNQNSKIVTTTKAYKPNKKNKNITNNQTNQKKNFKQNKFTKDSNLEAPNETQKKAQEK
NNNNKKNKSKQVKPNYKKRIKKKTKPQKQKHFFSNKI
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
ttgcaaaactatattcaaaaaaaaatattacagcttcaattccaaactttaactcccatc
caaaaagaagtcttttcacaatttgaaaaaccaggtaatctggtaggaattgctcctaca
ggaacaggcaaaactcatgcttatcttttaccgatattaagtaaaattgattttcaaaaa
acatttactcaagcaattattttagtacctaccaatgatttagtatttcaagtatgggaa
atgtttaaacaaattgaaaaaactaattttaccaaaattctttacagaggaatggataaa
caaaaagcaattaccacttttgaaaaaaaacaacctccattaatcattgcaactcccgat
aagttattagaatacgcttttaaacttaaaaaaattaacttaaaatatgtatcttattta
gtccttgatgaagctgatatgatgtttgatgaattatttttaaattcactagacccttta
attagccatcttaaagccaaaattttattattttcagctacatttaacgaacaattaaag
ccttttattaatcgttattttggcaaatctacttttattgatgtttataatcaaagtaat
cttaaccgtactttttatttattagaaacaactacaagtaaaatacagaccttaattcat
ctaaccaaagtccttaatccttatttagcactcatatttgtcaatgaaaaaaaagaacaa
gaattagtatttcaaactttacaaaatgacagtctcaaattacttaattacaactctgat
ttatcagtcaaacaaagaaaaaaaagccttaaagctattcataaattaaaatatcagtac
gtaattgcatcagatcttgcagccagaggaattgattttgatgcttcttgtgtcatccat
tacaacttaccttcacaccttgaatttttttttcacagaagtggtagaacatcaagaatg
ggaaaaaaaggtgaaataattgttttgtacgatccccaagaaattaaagaaaaagaaaaa
attaataaattaatccaattaggaattactttccataaatcctctttaagcaaaggtggt
tttataagaaatcaaaattcaaaaattgttacaactaccaaagcttataagccaaataaa
aaaaataaaaatatcacaaacaaccaaactaaccaaaaaaaaaatttcaaacaaaacaaa
tttaccaaagattccaatttggaagcaccaaatgaaacccaaaaaaaagcccaagaaaaa
aacaataacaataaaaaaaataaaagcaaacaagtaaaacccaattataaaaaaagaatc
aaaaagaaaaccaagccccaaaaacaaaagcactttttttcaaataaaatttaa
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